Cascade emission in electron beam ion trap plasma of W25+^{25+} ion

Spectra of the W$^{25+}$ ion are studied using the collisional-radiative model (CRM) with an ensuing cascade emission. It is determined that the cascade emission boosts intensities only of a few lines in the $10 - 3$ nm range. The cascade emission is responsible for the disappearance of structure of lines at about 6 nm in the electron beam ion trap plasma. Emission band at 4.5 to 5.3 nm is also affected by the cascade emission. The strongest lines in the CRM spectrum correspond to $4d^{9} 4f^{4} \rightarrow 4f^{3}$ transitions, while $4f^{2} 5d \rightarrow 4f^{3}$ transitions arise after the cascade emission is taken into account.Comment: 16 pages including 4 figures and 3 table

Interpreting microarray experiments via co-expressed gene groups analysis

International audienceMicroarray technology produces vast amounts of data by measuring simultaneously the expression levels of thousands of genes under hundreds of biological conditions. Nowadays, one of the principal challenges in bioinformatics is the interpretation of huge data using different sources of information. We propose a novel data analysis method named CGGA (Co-expressed Gene Groups Analysis) that automatically finds groups of genes that are functionally enriched, i.e. have the same functional annotations, and are co- expressed. CGGA automatically integrates the information of microarrays, i.e. gene expression profiles, with the functional annotations of the genes obtained by the genome-wide information sources such as Gene Ontology (GO)1. By applying CGGA to well-known microarray experiments, we have identified the principal functionally enriched and co-expressed gene groups, and we have shown that this approach enhances and accelerates the interpretation of DNA microarray experiments