The genotype-phenotype relationship in multicellular pattern-generating models - the neglected role of pattern descriptors

Background: A deep understanding of what causes the phenotypic variation arising from biological patterning processes, cannot be claimed before we are able to recreate this variation by mathematical models capable of generating genotype-phenotype maps in a causally cohesive way. However, the concept of pattern in a multicellular context implies that what matters is not the state of every single cell, but certain emergent qualities of the total cell aggregate. Thus, in order to set up a genotype-phenotype map in such a spatiotemporal pattern setting one is actually forced to establish new pattern descriptors and derive their relations to parameters of the original model. A pattern descriptor is a variable that describes and quantifies a certain qualitative feature of the pattern, for example the degree to which certain macroscopic structures are present. There is today no general procedure for how to relate a set of patterns and their characteristic features to the functional relationships, parameter values and initial values of an original pattern-generating model. Here we present a new, generic approach for explorative analysis of complex patterning models which focuses on the essential pattern features and their relations to the model parameters. The approach is illustrated on an existing model for Delta-Notch lateral inhibition over a two-dimensional lattice. Results: By combining computer simulations according to a succession of statistical experimental designs, computer graphics, automatic image analysis, human sensory descriptive analysis and multivariate data modelling, we derive a pattern descriptor model of those macroscopic, emergent aspects of the patterns that we consider of interest. The pattern descriptor model relates the values of the new, dedicated pattern descriptors to the parameter values of the original model, for example by predicting the parameter values leading to particular patterns, and provides insights that would have been hard to obtain by traditional methods. Conclusion: The results suggest that our approach may qualify as a general procedure for how to discover and relate relevant features and characteristics of emergent patterns to the functional relationships, parameter values and initial values of an underlying pattern-generating mathematical model

Solvable Model of Spiral Wave Chimeras

Spiral waves are ubiquitous in two-dimensional systems of chemical or biological oscillators coupled locally by diffusion. At the center of such spirals is a phase singularity, a topological defect where the oscillator amplitude drops to zero. But if the coupling is nonlocal, a new kind of spiral can occur, with a circular core consisting of desynchronized oscillators running at full amplitude. Here we provide the first analytical description of such a spiral wave chimera, and use perturbation theory to calculate its rotation speed and the size of its incoherent core.Comment: 4 pages, 4 figures; added reference, figure, further numerical test

Tensile Properties of Five Low-Alloy and Stainless Steels Under High-Heating-Rate and Constant-Temperature Conditions

Tensile properties of five low-alloy and stainless steels under high heating rate and constant temperatur

Stably non-synchronizable maps of the plane

Pecora and Carroll presented a notion of synchronization where an (n-1)-dimensional nonautonomous system is constructed from a given $n$-dimensional dynamical system by imposing the evolution of one coordinate. They noticed that the resulting dynamics may be contracting even if the original dynamics are not. It is easy to construct flows or maps such that no coordinate has synchronizing properties, but this cannot be done in an open set of linear maps or flows in $\R^n$, $n\geq 2$. In this paper we give examples of real analytic homeomorphisms of $\R^2$ such that the non-synchronizability is stable in the sense that in a full $C^0$ neighborhood of the given map, no homeomorphism is synchronizable

The multipliers of periodic points in one-dimensional dynamics

It will be shown that the smooth conjugacy class of an $S-$unimodal map which does not have a periodic attractor neither a Cantor attractor is determined by the multipliers of the periodic orbits. This generalizes a result by M.Shub and D.Sullivan for smooth expanding maps of the circle

Quick minds don't blink: electrophysiological correlates of individual differences in attentional selection.

A well-established phenomenon in the study of attention is the attentional blink-a deficit in reporting the second of two targets when it occurs 200-500 msec after the first. Although the effect has been shown to be robust in a variety of task conditions, not every individual participant shows the effect. We measured electroencephalographic activity for "nonblinkers" and "blinkers" during execution of a task in which two letters had to be detected in an sequential stream of digit distractors. Nonblinkers showed an earlier P3 peak, suggesting that they are quicker to consolidate information than are blinkers. Differences in frontal selection positivity were also found, such that nonblinkers showed a larger difference between target and distractor activation than did blinkers. Nonblinkers seem to extract target information better than blinkers do, allowing them to reject distractors; more easily and leaving sufficient resources available to report both targets

No elliptic islands for the universal area-preserving map

A renormalization approach has been used in \cite{EKW1} and \cite{EKW2} to prove the existence of a \textit{universal area-preserving map}, a map with hyperbolic orbits of all binary periods. The existence of a horseshoe, with positive Hausdorff dimension, in its domain was demonstrated in \cite{GJ1}. In this paper the coexistence problem is studied, and a computer-aided proof is given that no elliptic islands with period less than 20 exist in the domain. It is also shown that less than 1.5% of the measure of the domain consists of elliptic islands. This is proven by showing that the measure of initial conditions that escape to infinity is at least 98.5% of the measure of the domain, and we conjecture that the escaping set has full measure. This is highly unexpected, since generically it is believed that for conservative systems hyperbolicity and ellipticity coexist

The Haroche-Ramsey experiment as a generalized measurement

A number of atomic beam experiments, related to the Ramsey experiment and a recent experiment by Brune et al., are studied with respect to the question of complementarity. Three different procedures for obtaining information on the state of the incoming atom are compared. Positive operator-valued measures are explicitly calculated. It is demonstrated that, in principle, it is possible to choose the experimental arrangement so as to admit an interpretation as a joint non-ideal measurement yielding interference and ``which-way'' information. Comparison of the different measurements gives insight into the question of which information is provided by a (generalized) quantum mechanical measurement. For this purpose the subspaces of Hilbert-Schmidt space, spanned by the operators of the POVM, are determined for different measurement arrangements and different values of the parameters.Comment: REVTeX, 22 pages, 5 figure