Regulators of tumor angiogenesis are modulated in colon carcinoma cells by stress inflicted via NO and PDTC

Interleukin (IL)-8, heme oxygenase-1 (HO-1), and vascular endothelial growth factor (VEGF) appear to be critically involved in immune responses associated with inflammation, infection, and tumor growth. Regulation of these mediators was studied in the human colon carcinoma cell line DLD-1. Here we report that pyrrolidine dithiocarbamate (PDTC) not only augmented tumor necrosis factor-a induced release of IL-8, but also mediated IL-8 expression as a single stimulus. Mutational analysis of the IL-8 promotor and electrophoretic mobility shift analysis revealed that activation of the transcription factor activator protein-1 (AP-1) and a constitutive nuclear factor-KB (NF-KB) binding activity in DLD-1 cells were mandatory for PDTC-induced IL-8 expression. Besides IL-8, PDTC also upregulated expression of HO-1 and VEGF in these cells. Induction of IL-8 by PDTC was not restricted to DLD-1 cells, but was observed as well in Caco-2 colon carcinoma cells and in peripheral blood mononuclear cells. PDTC is currently advocated for use as chemotherapeutic drug in the treatment of certain malignancies, among them colorectal cancer. Induction of IL-8, HO-1, and VEGF may affect therapeutic applications of this agent. Expression of inducible nitric oxide (NO) synthase and production of NO appears to be a marker of tumor progression in human neoplasia, among them melanoma, head and neck cancer, and colorectal cancer. Since tumor-promoting functions of NO have been associated with increased angiogenesis at the tumor site, we investigated effects of NO on the production of selected chemokines that are supposed to differentially regulate tumor growth, namely proangiogenic IL-8 as well as tumorsuppressive interferon-inducible protein-10 (IP-10) and monokine induced by interferon-y (MIG). These chemokines are expressed by colon carcinoma cells after stimulation with the combination IL-1ß/Interferon (IFN)y. Under these conditions, release of IL-8 was exclusively mediated by IL-1ß but not by IFNy, whereas production of IP-10 and MIG was dependent on activation by IFNy. Effects of NO were analyzed by incubation with the NO-donor DETA-NO. Expression and release of IL-8 from colon carcinoma cells was markedly upregulated by NO. In addition, NO enhanced gene expression of vascular endothelial growth factor (VEGF). Accordingly, basal release of VEGF was significantly augmented in cells exposed to NO. In contrast, IL-1ß/IFNy-induced production of IP-10 and MIG was suppressed by NO. Likewise, overproduction of IFNy-dependent inducible NO synthase was restrained by NO in DLD-1 cells. The present data are consistent with previous observations that relate NO to enhanced tumor angiogenesis and imply that NO-mediated upregulation of IL-8 and VEGF as well as downregulation of IP-10 and MIG expression may contribute to this phenomenon.Der Produktion von Interleukin-8 (IL-8), Hämoxygenase-1 (HO-1), und dem vaskulären endothelialen Wachstumsfaktor (VEGF) wird zunehmend größere Bedeutung im Rahmen der Regulation der Immunantwort bei Entzündung, Infektion und Tumorwachstum zugemessen. Ziel dieser Arbeit war die Untersuchung der Regulation dieser Botenstoffe in vitro durch Verwendung der humanen Dickdarmkarzinomzellinie DLD-1. Die Substanz Pyrrolidinedithiocarbamate (PDTC) verstärkt nicht nur die durch Tumornekrosefaktor-a (TNF-a) vermittelte Ausschüttung von IL-8, sondern induziert auch als alleiniger Stimulus die IL-8-Sekretion. Mutationsanalysen des IL-8-Promotors und "Electrophoretic Mobility Shift" Untersuchungen (EMSA) zeigten, daß die Aktivierung des Transkriptionsfaktors AP-1 (Aktivator Protein-1) und die Bindungsaktivität von konstitutiv aktiviertem NF-KB in DLD-1 Zellen für die PDTC induzierte IL-8 Expression zwingend erforderlich waren. Weiterhin war PDTC in der Lage in DLD-1 Zellen neben IL-8 auch die Expression von HO-1 und VEGF zu verstärken. Die Induktion von IL-8 durch PDTC war nicht nur auf DLD-1 Zellen beschränkt, sondern wurde auch in Caco-2 Zellen (ebenfalls Dickdarmkrebszellen) und in humanen mononukleären Blutzellen beobachtet. Die Verwendung von PDTC wird seit kurzem als Kombinationspräparat für Zytostatia zur Behandlung von verschiedenen bösartigen Tumoren, unter ihnen auch Darmkrebs, vorgeschlagen. Aus unseren Versuchen läßt sich ableiten, daß die Induktion von IL-8, HO-1 und VEGF die therapeutische Anwendung dieser Substanz nachteilig beeinflussen könnte. Dies ergibt sich daraus, daß alle drei genannten Faktoren durch proangiogene Wirkungen das Tumorwachstum fördern. Die Expression der induzierbaren Stickoxidsynthase und die Produktion von Stickoxid (NO) korreliert mit der Angiogenese bei verschiedenen Krebserkrankungen darunter Melanome, Tumore im Hals- und Kopfbereich und Darmkrebs. Da tumorbegünstigende Funktionen von NO mit vermehrter Angiogenese in Verbindung gebracht werden, wurden die Effekte von NO hinsichtlich der Produktion von ausgesuchten Chemokinen, die an der Steuerung des Tumorwachstums beteiligt sind, untersucht. Zu diesen Chemokinen gehören das proangiogene IL-8 sowie das tumorsuppressiv durch Interferon induzierbare Protein-10 (IP-10) und das Monokin induziert durch Interferon-y (MIG). Diese Chemokine werden, nach Stimulation mit IL- 1ß und lnterferon-? (IFN-?) von DLD-1 Zellen, ausgeschüttet. Unter diesen Bedingungen wird die IL-8 Freisetzung alleine durch IL-1ß vermittelt, aber nicht durch INFy. Im Gegensatz zu IL-8 hängt die Sekretion von IP-10 und MIG von der Aktivierung durch IFNy ab. Die Effekte von NO wurden analysiert indem DLD-1 Zellen mit dem NO-Donor DETA-NO inkubiert wurden. DETA-NO besitzt eine Halbwertzeit von 16,5h und simuliert damit die Effekte der endogenen NO-Synthase. Synthese und Freisetzung von IL-8 wurden durch die Behandlung mit NO stark gesteigert. Außerdem wurde in Zellen die dem NO-Donor ausgesetzt wurden die basale Sekretion des VEGF signifikant verstärkt. Dies steht im Gegensatz zur IL-Iß/IFNy-induzierten Produktion von IP-10 und MIG, beide wurden durch Koinkubation mit NO unterdrückt. Ebenso wurde die Regulation der IFNy abhängigen induzierbaren Stickoxidsynthase in DLD-1 Zellen von NO unterdrückt. Die vorliegenden Daten ergänzen vorherige Studien, in denen NO mit Tumorangiogenese und verstärkten Tumorwachstum in Verbindung gebracht wird. Die NO vermittelte Induktion von IL-8 und VEGF, ebenso wie die Verminderung der IP-10 and MIG Expression, könnte zu diesem Phänomen beitragen. Unsere Studien stützen die Hypothese, daß spezifische lnhibitoren der iNOS therapeutischen Nutzen bei humanen Neoplasien haben könnten

Phylogenetics from paralogs

Motivation: Sequence-based phylogenetic approaches heavily rely on initial data sets to be composed of orthologous sequences only. Paralogs are treated as a dangerous nuisance that has to be detected and removed. Recent advances in mathematical phylogenetics, however, have indicated that gene duplications can also convey meaningful phylogenetic information provided orthologs and paralogs can be distinguished with a degree of certainty. Results: We demonstrate that plausible phylogenetic trees can be inferred from paralogy information only. To this end, tree-free estimates of orthology, the complement of paralogy, are first corrected to conform cographs and then translated into equivalent event-labeled gene phylogenies. A certain subset of the triples displayed by these trees translates into constraints on the species trees. While the resolution is very poor for individual gene families, we observe that genome-wide data sets are sufficient to generate fully resolved phylogenetic trees of several groups of eubacteria. The novel method introduced here relies on solving three intertwined NP-hard optimization problems: the cograph editing problem, the maximum consistent triple set problem, and the least resolved tree problem. Implemented as Integer Linear Program, paralogy-based phylogenies can be computed exactly for up to some twenty species and their complete protein complements. Availability:The ILP formulation is implemented in the Software ParaPhylo using IBM ILOG CPLEX (TM) Optimizer 12.6 and is freely available from http://pacosy.informatik.uni-leipzig.de/paraphyl

Trauma induces apoptosis in human thoracolumbar intervertebral discs

BACKGROUND: Vertebral fractures resulting from high energy trauma often comprise the risk of posttraumatic degenerative changes in the affected intervertebral discs (IVD). Particularly in conservatively treated patients, or in cases after implant removal of an exclusively posterior stabilization, consecutive disc degeneration and the associated functional losing of the spinal segment clearly represent detrimental treatment results. In this regard, apoptosis of IVD cells has been suggested to be involved in the critical changes of the extracellular matrix. METHODS: To investigate whether fractures of the vertebrae induce apoptosis in the affected IVD, disc tissue from patients (n = 17) undergoing open reduction and internal fixation of thoracolumbar spine fractures were analysed in regards to caspase activity, apoptosis-receptor expression levels and gene expression of apoptosis-regulating proteins such as Bax and Bcl-2. Healthy IVD tissue (n = 3) obtained from patients undergoing surgical resection of adjacent vertebrae were used as control samples. RESULTS: In contrast to healthy control IVD tissues, samples from traumatic thoracolumbar IVD showed positive TUNEL staining and a significant increase of caspase-3/7 activity. Interestingly, analyses of the initiator caspase-8 and -9 revealed significantly increased activation levels compared to control values, suggesting the coexistent activation of both the extrinsic (receptor-mediated) and intrinsic (mitochondria-mediated) apoptosis pathway. Accordingly, expression levels of the Fas receptor (FasR) mRNA were significantly increased. Although the TNF receptor I (TNFR I) was only slightly upregulated, corresponding TNFα from trauma IVD presented significantly increased mRNA expression values. Furthermore, traumatic IVD cells demonstrated significantly reduced expression of the mitochondria-bound anti-apoptotic Bcl-2, thereby maintaining baseline transcriptional levels of the pro-apoptotic Bax protein when compared to control IVD cells. CONCLUSION: Our data suggest that thoracolumbar fractures induce early caspase-dependent apoptosis in IVD cells of the affected intervertebral disc, in part, by downregulation of the anti-apoptotic protein Bcl-2 (intrinsic apoptosis pathway), as well as signalling via the death receptor complex (TNFR I and FasR)

Accumulation of mutations in antibody and CD8 T cell epitopes in a B cell depleted lymphoma patient with chronic SARS-CoV-2 infection

Antibodies against the spike protein of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) can drive adaptive evolution in immunocompromised patients with chronic infection. Here we longitudinally analyze SARS-CoV-2 sequences in a B cell-depleted, lymphoma patient with chronic, ultimately fatal infection, and identify three mutations in the spike protein that dampen convalescent plasma-mediated neutralization of SARS-CoV-2. Additionally, four mutations emerge in non-spike regions encoding three CD8 T cell epitopes, including one nucleoprotein epitope affected by two mutations. Recognition of each mutant peptide by CD8 T cells from convalescent donors is reduced compared to its ancestral peptide, with additive effects resulting from double mutations. Querying public SARS-CoV-2 sequences shows that these mutations have independently emerged as homoplasies in circulating lineages. Our data thus suggest that potential impacts of CD8 T cells on SARS-CoV-2 mutations, at least in those with humoral immunodeficiency, warrant further investigation to inform on vaccine design

Protective immune trajectories in early viral containment of non-pneumonic SARS-CoV-2 infection

The antiviral immune response to SARS-CoV-2 infection can limit viral spread and prevent development of pneumonic COVID-19. However, the protective immunological response associated with successful viral containment in the upper airways remains unclear. Here, we combine a multi-omics approach with longitudinal sampling to reveal temporally resolved protective immune signatures in non-pneumonic and ambulatory SARS-CoV-2 infected patients and associate specific immune trajectories with upper airway viral containment. We see a distinct systemic rather than local immune state associated with viral containment, characterized by interferon stimulated gene (ISG) upregulation across circulating immune cell subsets in non-pneumonic SARS-CoV2 infection. We report reduced cytotoxic potential of Natural Killer (NK) and T cells, and an immune-modulatory monocyte phenotype associated with protective immunity in COVID-19. Together, we show protective immune trajectories in SARS-CoV2 infection, which have important implications for patient prognosis and the development of immunomodulatory therapies

Potential of Core-Collapse Supernova Neutrino Detection at JUNO

JUNO is an underground neutrino observatory under construction in Jiangmen, China. It uses 20kton liquid scintillator as target, which enables it to detect supernova burst neutrinos of a large statistics for the next galactic core-collapse supernova (CCSN) and also pre-supernova neutrinos from the nearby CCSN progenitors. All flavors of supernova burst neutrinos can be detected by JUNO via several interaction channels, including inverse beta decay, elastic scattering on electron and proton, interactions on C12 nuclei, etc. This retains the possibility for JUNO to reconstruct the energy spectra of supernova burst neutrinos of all flavors. The real time monitoring systems based on FPGA and DAQ are under development in JUNO, which allow prompt alert and trigger-less data acquisition of CCSN events. The alert performances of both monitoring systems have been thoroughly studied using simulations. Moreover, once a CCSN is tagged, the system can give fast characterizations, such as directionality and light curve

Detection of the Diffuse Supernova Neutrino Background with JUNO

As an underground multi-purpose neutrino detector with 20 kton liquid scintillator, Jiangmen Underground Neutrino Observatory (JUNO) is competitive with and complementary to the water-Cherenkov detectors on the search for the diffuse supernova neutrino background (DSNB). Typical supernova models predict 2-4 events per year within the optimal observation window in the JUNO detector. The dominant background is from the neutral-current (NC) interaction of atmospheric neutrinos with 12C nuclei, which surpasses the DSNB by more than one order of magnitude. We evaluated the systematic uncertainty of NC background from the spread of a variety of data-driven models and further developed a method to determine NC background within 15\% with {\it{in}} {\it{situ}} measurements after ten years of running. Besides, the NC-like backgrounds can be effectively suppressed by the intrinsic pulse-shape discrimination (PSD) capabilities of liquid scintillators. In this talk, I will present in detail the improvements on NC background uncertainty evaluation, PSD discriminator development, and finally, the potential of DSNB sensitivity in JUNO

Innovative thermal management operating strategies for battery-electric heavy-duty trucks

Thermal management systems of electrified vehicles especially heavy-duty trucks face multiple competing goals such as minimum energy consumption, minimum battery degradation and highest passenger comfort. The design process of a suitable thermal management system addressing these goals requires a holistic approach including the various cross couplings occurring in real world operation. Therefore, a physics-based modular full-vehicle model is introduced. The model includes an electrified drive-train, passenger cabin and thermal management system. The mechanical and electrical drive-train components, including the battery, motor and power electronics are thermally connected with each other and the cabin using various cooling circuits. A reversible heat pump and several control units are used to adjust the specific thermal requirements leading to complex interconnections and cross couplings. We estimate the performance of a heavy-duty truck on typical long-distance trips including stops based on legal regulations used for fast charging and overnight charging. While charging overnight, conservation air conditioning of the cabin is performed as efficiently as possible. For this operation, we present different strategies for battery thermal conditioning. Operating strategies for the full vehicle, especially the thermal systems in a summer and a winter scenario are proposed. Simulations of a typical deployment scenario are performed to explore the effects of different operating and control strategies for thermal management. Our virtual deployment scenarios include easy to modify driving cycles, driving time regulations, charge stops and climatic boundary conditions. For evaluation purposes we present an energy-flow-diagram for the full vehicle. Based on the simulation results we recommend thermal system operating strategies in a full-vehicle context for heavy-duty truck long distance trips and charging