24 research outputs found
Geographic location of Antioquia state and the municipalities/villages included in the study.
<p>Geographic location of Antioquia state and the municipalities/villages included in the study.</p
Demographical and clinical characteristics of patients with OBI.
<p>Demographical and clinical characteristics of patients with OBI.</p
Sampling and viral concentration methodologies.
<p>Sampling and viral concentration methodologies.</p
Detection of HEV genome on wastewater samples collected on first sampling.
<p>Representative results of the positive samples amplified by RT-nested PCR targeting the ORF2/3 region (137bp). MW: Molecular Weight. 1. Girardota village 2. San Pedro de Los Milagros 3. Venecia 4.Granada 5.Arboletes 6. Cisneros 7. Nutibara village 8. Frontino 9. Puerto Berrío 10. Zaragoza. (-) negative control (+) positive control. 2% agarose gel electrophoresis stained with ethidium bromide.</p
Phylogenetic analysis of OBI sequences.
<p>Unrooted phylogenetic tree generated by Neighbor Joining method of partial (part) and full-length HBV sequences. The sequences of this study (TH3, TH6. TH28, TH75, TH78) indicated with black circles, were compared with representative sequences of all HBV genotypes (A-H), denoted with the genotype, GenBank accession number, and country. The genotype of the collapsed blanches is indicated and the bootstrap values from 1000 replicates are indicated in the internal nodes.</p
Demographical and clinical background of patients with OBI and chronic HBV infection.
<p>Demographical and clinical background of patients with OBI and chronic HBV infection.</p
Water treatment systems of the municipalities of Antioquia State included in the study
<p>Water treatment systems of the municipalities of Antioquia State included in the study</p
AST and ALT serum levels of the study pupulation.
<p>AST (A) and ALT (B) serum levels before transplant of all patients. Red lines indicates the median value.</p
HBV integration events of in cases of OBI cases.
<p>Integration sites are indicated with the approximate location in the ideograms of chromosomes 5, 16 and 20 based on G-banding and the sequence of integration (based on NCBI map viewer).</p
HEV phylogenic tree based on a fragment of 99 pb ORF2/3 HEV region.
<p>Based on the Bayesian Information Criterion (BIC), the model chosen for the phylogenetic analysis was Tamura 3-parameter + gamma distribution. The tree was constructed using the Neighbor-Joining method with 1000 bootstrap replicates. Samples obtained in this study are shown with a black circle (●). Clades for genotypes 1, 2, 3 and 4 are indicated with brackets. The GenBank accession number, genotype and country of isolation identify viral strains. Ven_Res_1erMx, SanPedro_Res_1erMx and Cisneros_Res_1erMx corresponded to wastewater sample collected on the first sampling at Venecia, San Pedro de los Milagros and Cisneros municipalities, respectively.</p