Additional file 1: of A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome

Table S1. Phylogenetic diversity (PD) and species richness (S) values by platform, experimental group, and bioinformatics pipeline. Table S2. Most abundant phyla identified by platform, experimental group, and bioinformatics pipeline. (DOCX 159 kb

Additional file 3: Table S3. of A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome

Relative abundance of taxonomic groups by treatment and bioinformatics pipeline. (XLSX 74 kb

Additional file 2: of A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome

Figure S1. Principal Coordinates Analysis PCoA (Unweighted UniFrac) plots of data generated by the three different platforms, analyzed by different bioinformatics pipelines and colored according to sequencing platform. PERMANOVA F and P values and ANOSIM R and P values are indicated. Figure S2. Differences in relative abundances of the most impacted taxa according to data generated by different platforms (indicated by different colors) and bioniformatic analysis pipelines (indicated across the top). (PPTX 4115 kb