O Mar em código de barras : DNA barcoding de organismos marinhos dos Açores.

A secção Biologia é coordenada pelo Professor Universitário Armindo Rodrigues.DNA Barcoding permite monitorizar espécies conhecidas de forma rápida e precisa, e detectar novas espécies para a ciência

New records of benthic marine red Algae (Ceramiales: Rhodophyta) from the Azores.

Sixteen new records of marine red algae (Ceramiales: Rhodophyta) are reported for the Azores islands: Aglaothamnion gallicum, A. pseudobyssoides, Anotrichium barbatum, A. furcellatum, Ceranium botryocarpum, C. flaccidum, C. secundatum, Compsothamnion decompositum, Wrangelia penicillata (Ceramiaceae): Haraldiophyllum bonnemaisonii. Radicilingua thysanorhizans (Delesseriaceae): Dasya hutchinsiae (Dasyaceae): Brongniartella byssoides, Chondria coerulescens, Polysiphonia foetidissima, P. furcellata (Rhodomelaceae). Data concerning morphology, phenology, ecological conditions and geographical distribution of the species in the Atlantic are presented

Bio-vigilância : a deteção de espécies recém-chegadas utilizando ferramentas moleculares

A secção UAciência é coordenada pelo Professor Universitário Armindo Rodrigues.[…]. Com o projeto NIS-DNA — Deteção precoce e monitorização de espécies não indígenas (NIS) em ecossistemas costeiros baseadas em ferramentas de sequenciação de alto débito — pretendemos desenvolver e otimizar metodologias baseadas em ADN, para a deteção precoce de espécies não indígenas em aguas costeiras, o que permitira uma análise de risco mais oportuna e precisa, a ser incluída em programas do quadro de gestão de controlo e propagação de espécies não indígenas. A sequenciação de alto débito, ou seja, através da obtenção do maior número possível de sequências a partir de um número reduzido de amostra ambientais (ex. água ou sedimento) permitirá uma rápida avaliação da composição das espécies constituintes das comunidades ambientais costeiras. As amostras ambientais serão recolhidas em portos, marinas recreativas e áreas adjacentes, já que estas são os principais locais de chegada de espécies provenientes de outros locais. Este projeto visa otimizar estas metodologias para os Açores, Madeira e Portugal continental (Norte e Centro). […].info:eu-repo/semantics/publishedVersio

Morphology and life history studies of Endarachne binghamiae (Scytosiphonaceae, Phaeophyta) from the Azores.

Copyright © 2003 Elsevier Science B.V. All rights reserved.First reported for the Azores in 1994, Endarachne binghamiae is commonly found throughout the year on hard substrates in the upper mid-tidal region of the exposed Azorean shores. Morphological and culture studies of this species were carried out based on material collected from six localities on the island of São Miguel. Erect thalli collected in the field are dorsiventrally flattened and arise from an encrusting base or small discoid holdfast. The erect blades, up to 13 cm long and 2 cm wide, are lanceolate or obovate, simple, solid and thin, gradually tapering at the base. The plurilocular sporangia lack paraphyses and are positioned in continuous sori covering most of the surface area of the blades. Reproductive plants, with plurilocular sporangia, occurred all year round. In culture, spores released from the plurilocular sporangia developed into small knot-filaments, which upon squashing exhibited a three-dimensional representation of a typical multistratose crust. These prostrate knot-filaments gave rise directly to new erect blades. No unilocular sporangia were seen and no evidence of sexuality was observed. These results are similar to those reported of Californian plants, indicating that the Azorean Endarachne have a monophasic heteromorphic life history

Additions to the Marine Algal (Seaweed) Flora of the Azores.

Copyright © 2001 by Walter de Gruyter.Ten species of benthic marine algae, new distribution records for the Azores achipelago, are itemised; two other species records (Heterosiphonia crispella and Laminaria ochroleuca) are confirmed for the islands. Six species (Bryopsis pennata, Cottoniella filamentosa, Dasya baillouviana, Feldmannia paradoxa, Heterosiphonia crispella and Lomentaria clavellosa) show an amphi-Atlantic distribution pattern; four (Bonnemaisonia asparagoides, Laminaria ochroleuca, Pterosphonia ardreana and Stylonema cornu-cervi) show a European-African-Mediterranean distribution pattern. The occurrence of Dudresnaya crassa, a western Atlantic warm-water species, represents an extension of its known distributional range to the east. An Ahnfeltiopsis was found which resembled A. intermedia, a species that occurs in the Atlantic Ocean to the south of the Azores

Re-visiting Vila do Porto marina (Santa Maria, Azores archipelago)

ABSTRACT: Harbours and marinas are important places of introduction and spread of non-native organisms, due to local, regional and international shipping activities, both commercial and recreational. Moreover, marina infrastructures are an increasingly common form of artificial habitat, which is likely to increase the recruitment of organisms relative to natural shores. The association of marine wildlife with artificial structures represents, generally, a preliminary indicator of the colonization status of invasive species. Santa Maria island is located in the Eastern Group of the Azores and is the southernmost island of the archipelago.info:eu-repo/semantics/publishedVersio

Life history of Colpomenia sinuosa (Scytosiphonaceae, Phaeophyceae) in the Azores.

Copyright © 2003 Phycological Society of America.Colpomenia sinuosa (Mertens ex Roth) Derbès and Solier (Scytosiphonaceae, Phaeophyceae) is a common species on the rocky intertidal shores of the Azores, where reproductive gametophytes occur throughout the year. Life-history studies of this species were carried out in culture, and both sexual and asexual reproduction were observed. Anisogamous gametes fused to form zygotes. The zygotes gave rise to a filamentous prostrate sporophyte generation bearing unilocular sporangia, under both short-day and long-day conditions at 15 and 22° C, and to both unilocular and plurilocular sporangia, under the lower temperature condition. Unispores developed into gametophytes, and plurispores gave rise to filamentous sporophytes. Asexual reproduction was carried out by unfused female gametes and asexual plurispores produced from the same gametophyte. Unfused gametes developed into filamentous prostrate sporophytes producing unilocular sporangia in both culture conditions, and unispores released from the sporangia gave rise to gametophytes. Asexual plurispores from field gametophytes, under both culture conditions, developed directly into new gametophytes. The species exhibited three types of life history: a heteromorphic, diplohaplontic; a heteromorphic, monophasic (both with alternation between the erect and filamentous prostrate thalli); and a monomorphic, monophasic

Taxonomic investigation of Ralfsia-like (Ralfsiales, Phaeophyceae) taxa in the North Atlantic Ocean based on molecular and morphological data, with descriptions of Pseudoralfsiaceae fam. nov., Pseudoralfsia azorica gen. et sp. nov. and Nuchella vesicularis gen. et sp. nov.

In this study we investigatedRalfsia-like crusts (i.e. excludingRalfsiasensu stricto,Stragulariaspp. and/or Scytosiphonaceae crustose phases) with an emphasis on the North Atlantic Ocean using molecular data (COI-5P, ITS andrbcL-3P) combined with morpho-anatomical comparisons of type material and contemporary specimens. Of the four species ofRalfsiapreviously reported in Europe, onlyR. fungiformisis presently recognized as belonging toRalfsiasensu stricto, Ralfsiaceae, with the remaining species,R. lucida, R. ovataandR. verrucosa, of uncertain taxonomic status. Our study revealed 11 independent genetic lineages ofRalfsia-like taxa, which were not assignable to any of the recognized families of the Ralfsiales. To accommodate this diversity, we propose Pseudoralfsiaceae Parente, Fletcher & G.W.Saunders fam. nov., including two new generaPseudoralfsiaParente, Fletcher & G.W.Saunders gen. nov. andNuchellaParente, Fletcher & G.W.Saunders gen. nov. The first genus includesPseudoralfsia verrucosa(Areschoug) Parente, Fletcher & G.W.Saunders comb. nov. as the generitype (the only species of the three remaining European species of uncertain taxonomic status assigned toRalfsiathat was reassessed here),P. azoricaParente, Fletcher & G.W.Saunders sp. nov. and seven undescribed genetic groups, which require additional vouchers for description. The second genus has as generitypeNuchella vesicularisParente, Fletcher & G.W.Saunders sp. nov., and also includesN. sp._1MP, which was represented by a single sterile specimen from Swanage, UK and consequently not characterized. Three characteristics differentiateNuchellafromPseudoralfsia- the former typically with numerous vesicles, non-synchronous development of the plurangia and hair pits arising from both middle and lower cells of the erect filaments. Species of Pseudoralfsiaceae can be distinguished fromRalfsiasensu stricto (Ralfsiaceae) mainly by DNA sequences and by consistently having frequent hair pits, and typically unsymmetrical thalli.This research was funded by FEDER funds through the Programa Operacional Factores de Competitividade - COMPETE and by national funds through FCT - Foundation for Science and Technology in the scope of the MACROBIOMOL project (ref. PTDC/MAR/114613/2009) and under the UID/BIA/50027/2013 and POCI-010145-FEDER-006821 programmes. Work completed in the Saunders Laboratory was supported by the Canadian Barcode of Life Network from Genome Canada in association with the Ontario Genomics Institute, the Natural Sciences and Engineering Research Council of Canada, as well as other sponsors listed at www.boldsystems.org, with infrastructure support from the Canada Foundation for Innovation and New Brunswick Innovation Foundation

Species gap analysis in DNA barcode reference libraries of marine non-indigenous species in the Azores archipelago

Coastal regions are widely recognised for their ecologic and socio-economic importance. The spread of invasive species, along with global climate change, overexploitation, pollution and habitat destruction, is a major threat to coastal ecosystems (Solan et al. 2004). Some of these species, in particular macroalgae and invertebrates, can spread quickly and become invasive, causing severe ecologic and economic impacts. When prevention fails, the early detection and surveillance of NIS could be essential for coordinating a timely and effective response to invasions. Marine ecosystems on oceanic islands, such as Azores, can be especially prone to invasions by non-indigenous species since they are characterized by a small number of native species and by a high availability of empty niches, and thus, the list of NIS is relatively long (Micael et al. 2014). There are no doubts that traditional morphology-based methods have highly contributed to the current knowledge about NIS communities inhabiting Portuguese coastal waters, including the Portuguese oceanic islands (Micael et al. 2014, Chainho et al. 2015). However, the hurdles associated with morphological methods may compromise the early detection and monitoring of the most risky species. On the other hand, DNA-based tools promise advantages over traditional ones, particularly the identification of individuals and life stages that cannot be recognized by using morphological approaches (Darling and Mahon 2011). Plus, most surveys typically target specific species or taxonomic groups, which may neither accurately represent overall ecosystems’ condition nor allow an early detection of NIS. Due to the above-mentioned reasons, it becomes a priority to develop and optimize novel detection methods capable to overcome some of these challenges and that would allow an early detection and ease the monitoring of NIS in coastal ecosystems. Particularly, the combination of DNA barcoding with high-throughput sequencing (HTS) renders metabarcoding the capacity to bolster current biodiversity assessments techniques (Cristescu 2014). Within this approach, genetic information can be obtained through the use of standardized DNA barcode markers targeting a wide taxonomic range of organisms in mixed specimens or environmental samples (Cristescu 2014). DNA-based tools promise a number of potential benefits over traditional methods, including increased sensitivity and specificity as well as greater throughput and cost effectiveness. However, the success of DNA-based methods is greatly dependent on the availability, taxonomic coverage and reliability of reference sequence databases, whose deficiencies can potentially compromise species identifications through HTS (Briski et al. 2016). In this study we conducted a species-gap analysis of DNA barcode sequences available for marine NIS occurring in the Azores archipelago in the Barcode of Life Data System V4 (BOLD V4) (Ratnasingham and Hebert 2007) and in the GenBank (https://www.ncbi.nlm.nih.gov/genbank/). The list of NIS occurring in Azores was compiled from a wide variety of sources, mainly from literature searches through scientific papers and reports, including recent field and taxonomic studies, and supplemented with existing databases and this is the list that was submitted to the 2019 interim ICES WGITMO report (International Council for the Exploration of the Sea; Working Group on Introductions and Transfers of Marine Organisms). The taxonomic classification of the compiled NIS followed the AlgaeBase and World Register of Marine Species (WoRMS) databases. A checklist of 80 marine NIS occurring in Azores archipelago was compiled and the species in the list were checked for the presence of public sequences on both BOLD v4 and GenBank databases. The species in the list were distributed by three kingdoms: i) Animalia (48 species), ii) Plantae (30 species) and iii) Chromista (2 species), comprehending 10 phyla. The most well represented phyla with NIS were Chordata (15 species), Mollusca and Bryozoa (both with 8 species) within Animalia, and Rhodophyta within Plantae (26 species); while the only represented phyla within Chromista was Ochrophyta with 2 species. In total, 3,884 sequences belonging to 25 different markers were found for the 80 species, published in BOLD and GenBank. Among these published sequences, the COI-5P is the most well represented loci, with 3,224 records belonging to 44 species. However, from the total species in the list, 25 were still missing a DNA sequence, which corresponded to ca. 31% of the total NIS. In addition, within sequenced species ca. 14% were singletons (i.e. only one sequence available). Animalia NIS were the most well represented with sequences, missing only for ca. 27% of the species, while for Chromista and Plantae the gap of missing species was higher than 35%. The current study allowed us to characterize the gaps in available sequences in public repositories for marine NIS occurring in the Azores archipelago. Actions developing DNA-based tools should be a priority for detection and effective management of biological invasions. DNA-based tools would allow the detection of early developmental stages or smaller organisms, reducing the time from introduction to discovery and increasing the success of NIS control and/or eradication (Holman et al. 2018). However, the gaps found in reference libraries can have strong implications for an accurate species identification through DNA-based tools. Prioritization efforts should be conducted in order to fulfil these gapsFCT – Fundação para a Ciência e a Tecnologia, I.P., in the scope of the project PTDC/BIA-BMA/29754/2017 and by FEDER funds through the Operational Programme for Competitiveness Factors - COMPETE and by National Funds through FCT - Foundation for Science and Technology under the UID/BIA/50027/2013 and POCI-01-0145-FEDER-00682

Morphological studies of Hapalospongidion macrocarpum and Nemoderma tingitanum (phaeophyceae) from the Salvage Islands (Madeira archipelago).

Two species of encrusting brown algae (Phaeophyceae) are newly recorded for the Salvage Islands (Madeira Archipelago) viz. Nemoderma tingitanum and Hapalospongidion macrocarpum. The species are described, and information is presented concerning their ecology, morphology and geographical distribution in the Atlantic