Direct Identification of the Meloidogyne incognita Secretome Reveals Proteins with Host Cell Reprogramming Potential

The root knot nematode, Meloidogyne incognita, is an obligate parasite that causes significant damage to a broad range of host plants. Infection is associated with secretion of proteins surrounded by proliferating cells. Many parasites are known to secrete effectors that interfere with plant innate immunity, enabling infection to occur; they can also release pathogen-associated molecular patterns (PAMPs, e.g., flagellin) that trigger basal immunity through the nematode stylet into the plant cell. This leads to suppression of innate immunity and reprogramming of plant cells to form a feeding structure containing multinucleate giant cells. Effectors have generally been discovered using genetics or bioinformatics, but M. incognita is non-sexual and its genome sequence has not yet been reported. To partially overcome these limitations, we have used mass spectrometry to directly identify 486 proteins secreted by M. incognita. These proteins contain at least segmental sequence identity to those found in our 3 reference databases (published nematode proteins; unpublished M. incognita ESTs; published plant proteins). Several secreted proteins are homologous to plant proteins, which they may mimic, and they contain domains that suggest known effector functions (e.g., regulating the plant cell cycle or growth). Others have regulatory domains that could reprogram cells. Using in situ hybridization we observed that most secreted proteins were produced by the subventral glands, but we found that phasmids also secreted proteins. We annotated the functions of the secreted proteins and classified them according to roles they may play in the development of root knot disease. Our results show that parasite secretomes can be partially characterized without cognate genomic DNA sequence. We observed that the M. incognita secretome overlaps the reported secretome of mammalian parasitic nematodes (e.g., Brugia malayi), suggesting a common parasitic behavior and a possible conservation of function between metazoan parasites of plants and animals

(Table 1) Mineralogy at DSDP Leg 81 Holes

This X-ray mineralogy study of Tertiary samples recovered from Rockall sites permitted the definition of four mineralogical units and the tracing of the paleoenvironmental evolution in this region

Minerals of bulk samples and the fine-grained (<2-µm) fractions from DSDP Leg 67 Holes

Leg 67 sample sediments are mainly composed of biogenic carbonate and biogenic siliceous materials. Apart from calcite, crystallized minerals are scarce; however, they are better represented in sites near the continent and in all Quaternary sediments. These minerals are: quartz, feldspars, smectite, and, rarely, chlorite, dolomite, and zeolite

Mineralogy at DSDP Site 82-558 and Hole 82-563

Downhole bulk-sample and clay-mineral analytical results for Sites 558 and 563 are presented in this chapter. These results show a Tertiary climatic and hydrologic evolution similar to that at other DSDP drill sites in the northeastern Atlantic Ocean (Sites 398, 403-406, 548-550, 552-555). The sediments recovered at both sites are primarily calcareous and chalky oozes characterized by >90% carbonate and minor quartz and plagioclase feldspar. Clay minerals smectite, kaolinite, illite, and chlorite are present throughout the cores; upsection, illite increases at the expense of smectite. The clay mineralogy suggests climatic cooling and increased ocean circulation during the Miocene. Intervals rich in very fine grained (<2 µm) quartz suggest times of increased eolian input. This could have resulted from development, during Oligocene and late Miocene time, of an arid, desertlike sediment provenance that lasted until the present day

Mineralogy at DSDP Leg 78A Holes

This chapter deals with the evolution of clay minerals in Cenozoic sediments from DSDP Sites 541, 542, and 543 east of the Lesser Antilles arc on and near the edge of the Barbados Ridge complex. Throughout the Miocene, smectite exceeds all other minerals at all three sites. From the Pliocene onward, however, illite becomes dominant and chlorite well-represented. Quantitative mineral differences among the three sites are significant up until the top of the Pliocene. But in the Pleistocene, the mineralogical composition becomes exactly the same at all sites. Data from the Caribbean region are used to interpret the results obtained. These involve two supply sources: (1) the adjacent islands that supply smectites and kaolinites, and (2) South America, which is the major source of illite and chlorite. The apparent northward migration of illite and chlorite on the Barbados Ridge complex and the changes reported in the quantitative distribution of the four clay minerals are most probably controlled by northerly currents along the northern coast of South America