Additional file 1 of Multiplex methods provide effective integration of multi-omic data in genome-scale models

The improved model of Escherichia coli with underground metabolism. The model is provided as a MATLAB file compatible with the COBRA toolbox. It includes the reactions in the latest iJO1366 reconstruction, as well as underground metabolism and new gene-protein-reaction associations. The resulting model contains 1380 genes, 3027 reactions (including exchange reactions), and 2151 metabolites. (MAT 214 kb

of Multiplex methods provide effective integration of multi-omic data in genome-scale models

of Multiplex methods provide effective integration of multi-omic data in genome-scale model

Additional file 2 of Multiplex methods provide effective integration of multi-omic data in genome-scale models

Flux rates of Colombos conditions. Full list of Colombos conditions and the corresponding flux rates predicted using trilevel linear programming. (XLSX 364 kb

of Multiplex methods provide effective integration of multi-omic data in genome-scale models

of Multiplex methods provide effective integration of multi-omic data in genome-scale model

of Multiplex methods provide effective integration of multi-omic data in genome-scale models

of Multiplex methods provide effective integration of multi-omic data in genome-scale model

of Multiplex methods provide effective integration of multi-omic data in genome-scale models

of Multiplex methods provide effective integration of multi-omic data in genome-scale model

of Multiplex methods provide effective integration of multi-omic data in genome-scale models

of Multiplex methods provide effective integration of multi-omic data in genome-scale model

Additional file 1 of Multiplex methods provide effective integration of multi-omic data in genome-scale models

The improved model of Escherichia coli with underground metabolism. The model is provided as a MATLAB file compatible with the COBRA toolbox. It includes the reactions in the latest iJO1366 reconstruction, as well as underground metabolism and new gene-protein-reaction associations. The resulting model contains 1380 genes, 3027 reactions (including exchange reactions), and 2151 metabolites. (MAT 214 kb

of Multiplex methods provide effective integration of multi-omic data in genome-scale models

of Multiplex methods provide effective integration of multi-omic data in genome-scale model

of Multiplex methods provide effective integration of multi-omic data in genome-scale models

of Multiplex methods provide effective integration of multi-omic data in genome-scale model