Quantifying literature citations, index terms, and Gene Ontology annotations in the Saccharomyces Genome Database to assess results-set clustering utility

A set of 37,325 unique literature citations was identified from 120,078 literature-based annotations in the Saccharomyces Genome Database (SGD). The citations, gene products, and related Gene Ontology (GO) annotations were analyzed to quantify unique articles, journals, genes, and to rank by publication year, language, and GO term frequency. GO terms, MeSH indexing terms, MeSH Journal Descriptors, and SGD Literature Topics were quantified and analyzed to assess their potential utility for results set clustering. Results: Bradford’s Law of Scattering was shown to hold for the citations, journals, gene products, and GO annotations. Only the MeSH terms and article title/abstract pairs had significant numbers of term co-occurrence. Multiple term types may be useful for faceted searching and clustered results set browsing if the strengths of each are leveraged

Junior Faculty Engagement at iSchools: Personal Experience during the First Several Years

This roundtable discussion will explore how junior faculty at iSchools have been able to embed their research, teaching, and service activities within their schools, the larger institutions, and broader communities. The session will also focus on the ways in which junior faculty have received guidance in their roles--from the job search through the first several years in a tenure-track position. Roundtable leaders represent a variety of institutions and experiences--as faculty at the University of Illinois at Urbana-Champaign [WJM], the University of Maryland [SP], the University of North Carolina at Chapel Hill [PME], and the University of Texas at Austin [MW], and with doctoral-level preparation at the University of North Carolina at Chapel Hill [WJM, MW], the University of Toronto [SP], and the University of Washington [PME]. While the annual junior faculty mentoring event at the iConference specifically targets junior faculty as participants, this roundtable session offers a more inclusive environment for the discussion of this topic, specifically engaging doctoral students and senior faculty as well as their junior colleagues

Effects of geographic factors on the education and training of health sciences librarians in the mid-Atlantic states

Investigates potential relationships between the geographic location of health sciences librarians’ graduate education and training, native place of residence, and their subsequent employment and continuing education, in order to assess demand for HSL education within the region.Ope

Contextual Analysis of Variation and Quality in Human-curated Gene Ontology Annotations

Two prospective randomized controlled studies of scientific curators of model organism databases (MODs) were conducted using common document collections to investigate the origins, nature, and extent of variation in curators' Gene Ontology (GO) annotations. Additional contextual data about curators' backgrounds, experience, personal annotation behaviors, and work practices were also collected to provide additional means of explaining variation. A corpus of nearly 4,000 new GO annotations covering 5 organisms was generated by 31 curators and analyzed at the paper, instance, and GO element levels. Variation was observed by organism expertise, by group assignment, and between individual and consensus annotations. Years of GO curation experience was found to not be a predictor of annotation instance quantities. Five facets of GO annotation quality (Consistency, Specificity, Completeness, Validity, and Reliability) were evaluated for utility, and showed promise for use in training novice curators. Pairwise matching and comparison of instances was found to be difficult and atypical, limiting the usefulness of the quality measures. Content analysis was performed on more than 600 pages of curators' hand-annotated paper journal articles used in GO annotation, yielding six types of common notations

Understanding biocurators: Attributes and roles of model organism database curators.

This project describes biocurators' educational backgrounds and biological expertise, organisms with which they have laboratory- and Gene Ontology annotation experience, and details about their work tasks and roles.Ope

Planning Bioinformatics Education and Information Services in an Academic Health Sciences Library

This article describes a planning process for the development of bioinformatics education and information services in an academic health sciences library. The project’s five goals were to:(1) understand the changing environment for information related to bioinformatics;(2) understand the information needs of faculty whose work involves bioinformatics; (3) explore potential service offerings; (4) anticipate factors influencing the implementation of new services; and (5) envision strategies for recruiting and training information professionals to fill these roles. The authors describe the library’s practice environment and review recent research on the information needs of biomedical researchers and clinicians. A variety of potential library-based services in relation to bioinformatics are enumerated, and the institutional, environmental, and personnel factors affecting the deployment of services are examined. Finally, the authors describe the educational and training context of the library, and explore potential roles for librarians and information professionals in the context of bioinformatics services

Momentum and Coordinate Space Three-nucleon Potentials

In this paper we give explicit formulae in momentum and coordinate space for the three-nucleon potentials due to $\rho$ and $\pi$ meson exchange, derived from off-mass-shell meson-nucleon scattering amplitudes which are constrained by the symmetries of QCD and by the experimental data. Those potentials have already been applied to nuclear matter calculations. Here we display additional terms which appear to be the most important for nuclear structure. The potentials are decomposed in a way that separates the contributions of different physical mechanisms involved in the meson-nucleon amplitudes. The same type of decomposition is presented for the $\pi - \pi$ TM force: the $\Delta$, the chiral symmetry breaking and the nucleon pair terms are isolated.Comment: LATEX, 33 pages, 3 figures (available as postscript files upon request

The compound machinery of government: The case of seconded officials in the European commission

This article explores the compound machinery of government. Attention is directed toward decision making within the core executive of the European Union - the European Commission. The article studies seconded national civil servants (SNEs) hired on short-term contracts. The analysis benefits from an original and rich body of surveys and interview data derived from current and former SNEs. The decision-making dynamics of SNEs are shown to contain a compound mix of departmental, epistemic, and supranational dynamics. This study clearly demonstrates that the socializing power of the Commission is conditional and only partly sustained when SNEs exit the Commission. Any long-lasting effect of socialization within European Union's executive machinery of government is largely absent. The compound decision-making dynamics of SNEs are explained by (1) the organizational affiliations of SNEs, (2) the formal organization of the Commission apparatus, and (3) only partly by processes of resocialization of SNEs within the Commission

White Habits, Anti‐Racism, and Philosophy as a Way of Life

This paper examines Pierre Hadot’s philosophy as a way of life in the context of race. I argue that a “way of life” approach to philosophy renders intelligible how anti-racist confrontation of racist ideas and institutionalized white complicity is a properly philosophical way of life requiring regulated reflection on habits – particularly, habits of whiteness. I first rehearse some of Hadot’s analysis of the “way of life” orientation in philosophy, in which philosophical wisdom is understood as cultivated by actions which result in the creation of wise habits. I analyze a phenomenological claim about the nature of habit implied by the “way of life” approach, namely, that habits can be both the cause and the effect of action. This point is central to the “way of life” philosophy, I claim, in that it makes possible the intelligent redirection of habits, in which wise habits are more the effect than simply the cause of action. Lastly, I illustrate the “way of life” approach in the context of anti-racism by turning to Linda Martín Alcoff’s whiteness anti-eliminativism, which outlines a morally defensible transformation of the habits of whiteness. I argue that anti-racism provides an intelligible context for modern day forms of what Hadot calls “spiritual exercises” insofar as the “way of life” philosophy is embodied in the practice of whites seeing themselves seeing as white and seeing themselves being seen as white