3,131 research outputs found
Xanthomonas campestris pv. campestris race 1 is the main causal agent of black rot of Brassicas in Southern Mozambique
Severe outbreaks of bacterial black rot caused by Xanthomonas campestris pv. campestris (Xcc) were observed in Brassica production fields of Southern Mozambique. The causal agent of the disease in the Mahotas and Chòkwé districts was identified and characterised. In total, 83 Xanthomonas-like strains were isolated from seed samples and leaves of cabbage and tronchuda cole with typical symptoms of the disease. Forty-six out of the 83 strains were found to be putative Xcc in at least one of the tests used: Classical biochemical assays, enzyme-linked immunosorbent assay (ELISA) with monoclonal antibodies, Biolog identification system, polymerase chain reaction (PCR) with specific primers and pathogenicity tests. The ELISA tests were positive for 43 strains. Biolog identified 43 strains as Xanthomonas, but only 32 as Xcc. PCR tests with primers targeting a fragment of the hrpF gene were positive for all 46 strains tested. Three strains were not pathogenic or weakly pathogenic and all other strains caused typical black rot symptoms in brassicas. Race type differentiation tests revealed the Xcc strains from Mozambique as members of race 1. The prevalence of this pathogenic race of the Xcc pathogen in Mozambique should be considered when black rot resistant cultivars are evaluated or introduced into the production regions of this country
Slow-light enhanced optical detection in liquid-infiltrated photonic crystals
Slow-light enhanced optical detection in liquid-infiltrated photonic crystals
is theoretically studied. Using a scattering-matrix approach and the
Wigner-Smith delay time concept, we show that optical absorbance benefits both
from slow-light phenomena as well as a high filling factor of the energy
residing in the liquid. Utilizing strongly dispersive photonic crystal
structures, we numerically demonstrate how liquid-infiltrated photonic crystals
facilitate enhanced light-matter interactions, by potentially up to an order of
magnitude. The proposed concept provides strong opportunities for improving
existing miniaturized absorbance cells for optical detection in lab-on-a-chip
systems.Comment: Paper accepted for the "Special Issue OWTNM 2007" edited by A.
Lavrinenko and P. J. Robert
Observation of Three-dimensional Long-range Order in Smaller Ion Coulomb Crystals in an rf Trap
Three-dimensional long-range ordered structures in smaller and
near-spherically symmetric Coulomb crystals of ^{40}Ca^+ ions confined in a
linear rf Paul trap have been observed when the number of ions exceeds ~1000
ions. This result is unexpected from ground state molecular dynamics (MD)
simulations, but found to be in agreement with MD simulations of metastable ion
configurations. Previously, three-dimensional long-range ordered structures
have only been reported in Penning traps in systems of ~50,000 ions or more.Comment: 5 pages; 4 figures; to appear in Phys. Rev. Lett.; changed content
Low-loss criterion and effective area considerations for photonic crystal fibers
We study the class of endlessly single-mode all-silica photonic crystal
fibers with a triangular air-hole cladding. We consider the sensibility to
longitudinal nonuniformities and the consequences and limitations for realizing
low-loss large-mode area photonic crystal fibers. We also discuss the
dominating scattering mechanism and experimentally we confirm that both macro
and micro-bending can be the limiting factor.Comment: Accepted for Journal of Optics A - Pure and Applied Optic
Universality in edge-source diffusion dynamics
We show that in edge-source diffusion dynamics the integrated concentration
N(t) has a universal dependence with a characteristic time-scale tau=(A/P)^2
pi/(4D), where D is the diffusion constant while A and P are the
cross-sectional area and perimeter of the domain, respectively. For the
short-time dynamics we find a universal square-root asymptotic dependence
N(t)=N0 sqrt(t/tau) while in the long-time dynamics N(t) saturates
exponentially at N0. The exponential saturation is a general feature while the
associated coefficients are weakly geometry dependent.Comment: 4 pages including 4 figures. Minor changes. Accepted for PR
Transport coefficients for electrolytes in arbitrarily shaped nano and micro-fluidic channels
We consider laminar flow of incompressible electrolytes in long, straight
channels driven by pressure and electro-osmosis. We use a Hilbert space
eigenfunction expansion to address the general problem of an arbitrary cross
section and obtain general results in linear-response theory for the hydraulic
and electrical transport coefficients which satisfy Onsager relations. In the
limit of non-overlapping Debye layers the transport coefficients are simply
expressed in terms of parameters of the electrolyte as well as the geometrical
correction factor for the Hagen-Poiseuille part of the problem. In particular,
we consider the limits of thin non-overlapping as well as strongly overlapping
Debye layers, respectively, and calculate the corrections to the hydraulic
resistance due to electro-hydrodynamic interactions.Comment: 13 pages including 4 figures and 1 table. Typos corrected. Accepted
for NJ
Bayesian Error Estimation in Density Functional Theory
We present a practical scheme for performing error estimates for Density
Functional Theory calculations. The approach which is based on ideas from
Bayesian statistics involves creating an ensemble of exchange-correlation
functionals by comparing with an experimental database of binding energies for
molecules and solids. Fluctuations within the ensemble can then be used to
estimate errors relative to experiment on calculated quantities like binding
energies, bond lengths, and vibrational frequencies. It is demonstrated that
the error bars on energy differences may vary by orders of magnitude for
different systems in good agreement with existing experience.Comment: 5 pages, 3 figure
Liquid-infiltrated photonic crystals - enhanced light-matter interactions for lab-on-a-chip applications
Optical techniques are finding widespread use in analytical chemistry for
chemical and bio-chemical analysis. During the past decade, there has been an
increasing emphasis on miniaturization of chemical analysis systems and
naturally this has stimulated a large effort in integrating microfluidics and
optics in lab-on-a-chip microsystems. This development is partly defining the
emerging field of optofluidics. Scaling analysis and experiments have
demonstrated the advantage of micro-scale devices over their macroscopic
counterparts for a number of chemical applications. However, from an optical
point of view, miniaturized devices suffer dramatically from the reduced
optical path compared to macroscale experiments, e.g. in a cuvette. Obviously,
the reduced optical path complicates the application of optical techniques in
lab-on-a-chip systems. In this paper we theoretically discuss how a strongly
dispersive photonic crystal environment may be used to enhance the light-matter
interactions, thus potentially compensating for the reduced optical path in
lab-on-a-chip systems. Combining electromagnetic perturbation theory with
full-wave electromagnetic simulations we address the prospects for achieving
slow-light enhancement of Beer-Lambert-Bouguer absorption, photonic band-gap
based refractometry, and high-Q cavity sensing.Comment: Invited paper accepted for the "Optofluidics" special issue to appear
in Microfluidics and Nanofluidics (ed. Prof. David Erickson). 11 pages
including 8 figure
Cooperative fluorescence from a strongly driven dilute cloud of atoms
We investigate cooperative fluorescence in a dilute cloud of strongly driven
two-level emitters. Starting from the Heisenberg equations of motion, we
compute the first-order scattering corrections to the saturation of the
excited-state population and to the resonance-fluorescence spectrum, which both
require going beyond the state-of-the-art linear-optics approach to describe
collective phenomena. A dipole blockade is observed due to long range
dipole-dipole coupling that vanishes at stronger driving fields. Furthermore,
we compute the inelastic component of the light scattered by a cloud of many
atoms and find that the Mollow triplet is affected by cooperativity. In a lobe
around the forward direction, the inelastic Mollow triplet develops a spectral
asymmetry, observable under experimental conditions.Comment: 5 pages, 3 figures, supplementary material available upon reques
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