Soil Infrastructure, Interfaces & Translocation Processes in Inner Space (“Soil-it-is”): Towards a Road Map for the Constraints and Crossroads of Soil Architecture and Biophysical Processes

Soil functions and their impact on health, economy, and the environment are evident at the macro scale but determined at the micro scale, based on interactions between soil micro-architecture and the transport and transformation processes occurring in the soil infrastructure comprising pore and particle networks and at their interfaces. Soil structure formation and its resilience to disturbance are highly dynamic features affected by management (energy input), moisture (matric potential), and solids composition and complexation (organic matter and clay interactions). In this paper we review and put into perspective preliminary results of the newly started research program “Soil-it-is” on functional soil architecture. To identify and quantify biophysical constraints on soil structure changes and resilience, we claim that new approaches are needed to better interpret processes and parameters measured at the bulk soil scale and their links to the seemingly chaotic soil inner space behavior at the micro scale. As a first step, we revisit the soil matrix (solids phase) and pore system (water and air phases), constituting the complementary and interactive networks of soil infrastructure. For a field-pair with contrasting soil management, we suggest new ways of data analysis on measured soil-gas transport parameters at different moisture conditions to evaluate controls of soil matrix and pore network formation. Results imply that some soils form sponge-like pore networks (mostly healthy soils in terms of agricultural and environmental functions), while other soils form pipe-like structures (agriculturally poorly functioning soils), with the difference related to both complexation of organic matter and degradation of soil structure. The recently presented Dexter et al. (2008) threshold (ratio of clay to organic carbon of 10 kg kg-1) is found to be a promising constraint for a soil’s ability to maintain or regenerate functional structure. Next, we show the Dexter et al. (2008) threshold may also apply to hydrological and physical-chemical interface phenomena including soil-water repellency and sorption of volatile organic vapors (gas-water-solids interfaces) as well as polycyclic aromatic hydrocarbons (water-solids interfaces). However, data for differently-managed soils imply that energy input, soil-moisture status, and vegetation (quality of eluded organic matter) may be equally important constraints together with the complexation and degradation of organic carbon in deciding functional soil architecture and interface processes. Finally, we envision a road map to soil inner space where we search for the main controls of particle and pore network changes and structure build-up and resilience at each crossroad of biophysical parameters, where, for example, complexation between organic matter and clay, and moisture-induced changes from hydrophilic to hydrophobic surface conditions can play a role. We hypothesize that each crossroad (e.g. between organic carbon/clay ratio and matric potential) may control how soil self-organization will manifest itself at a given time as affected by gradients in energy and moisture from soil use and climate. The road map may serve as inspiration for renewed and multi-disciplinary focus on functional soil architecture

Searching the critical soil organic carbon threshold for satisfactory tilth conditions – test of the Dexter clay:carbon hypothesis

The concern for deteriorating soil structure at low soil organic matter (SOM) contents calls for better knowledge of SOM interaction with soil minerals as well as guidelines for soil conservation. We measured clay dispersibility in a field with a textural gradient. Our results support the concept of differentiating soil content of clay in a complexed and non-complexed part although our data did not point out an exact clay/OC ratio threshold. Our results also indicated that labile fractions of SOM may play an important role in soil physical behavior. We revisited literature data and found evidence that soil content of fines (<2 or <20 μm) is a major determinant of soil specific surface area (SA). We noted that soil SA coverage with SOM changed dramatically at a specific ratio of either clay (<2 μm) or clay+silt (<20 μm) with soil OC. This is an indirect support of the recently suggested quantification of the soil mineral ‘saturation’ hypothesis. More studies are needed on the causal relationships. We conclude that clay/OC~10 or (clay+silt20μm)/OC~20 are corresponding indices reflecting shift in soil physical behavior

Prediction of biopore- and matrix-dominated flow from X-ray CT-derived macropore network characteristics

Peer reviewedPublisher PD

What do patients want from their psychiatrist? A cross- sectional questionnaire based exploratory study from Karachi

<p>Abstract</p> <p>Background</p> <p>The aspects of consultation that are important for psychiatric patients have always remained a less acknowledged area. The aim of this study was to identify these aspects.</p> <p>Methods</p> <p>A Cross-sectional, questionnaire based study was carried out in a psychiatry outpatient clinic of two tertiary care hospitals in a developing country. The patients were asked to fill out the questionnaire containing a total of 11 close-ended questions plus 1 open-ended question. They graded them as not important, important, very important or do not know. Non-psychotic patients aged 18 and above, visiting the clinic were recruited into the study before they went in for their first consultation.</p> <p>Results</p> <p>The response rate of patients was 84%. More than 90% wanted the doctor to tell them the cause of their illness, talk to them about their condition, provide symptomatic relief, let them know that how long their illness would last and make the final decision about their treatment plan. Less than 20% wanted to be part of a support network. A significant 82% wanted talking therapy as part of their treatment plan.</p> <p>Conclusion</p> <p>The three issues, most important for patients were: the doctor should listen to them, make the final decision about treatment and provide symptomatic relief. Only 20% wanted to be a part of patients' support group.</p

Placental lactogens induce serotonin biosynthesis in a subset of mouse beta cells during pregnancy

AIMS/HYPOTHESIS: Upregulation of the functional beta cell mass is required to match the physiological demands of mother and fetus during pregnancy. This increase is dependent on placental lactogens (PLs) and prolactin receptors, but the mechanisms underlying these events are only partially understood. We studied the mRNA expression profile of mouse islets during pregnancy to gain a better insight into these changes. METHODS: RNA expression was measured ex vivo via microarrays and quantitative RT-PCR. In vivo observations were extended by in vitro models in which ovine PL was added to cultured mouse islets and MIN6 cells. RESULTS: mRNA encoding both isoforms of the rate-limiting enzyme of serotonin biosynthesis, tryptophan hydroxylase (TPH), i.e. Tph1 and Tph2, were strongly induced (fold change 25- to 200-fold) during pregnancy. This induction was mimicked by exposing islets or MIN6 cells to ovine PLs for 24 h and was dependent on janus kinase 2 and signal transducer and activator of transcription 5. Parallel to Tph1 mRNA and protein induction, islet serotonin content increased to a peak level that was 200-fold higher than basal. Interestingly, only a subpopulation of the beta cells was serotonin-positive in vitro and in vivo. The stored serotonin pool in pregnant islets and PL-treated MIN6 cells was rapidly released (turnover once every 2 h). CONCLUSIONS/INTERPRETATION: A very strong lactogen-dependent upregulation of serotonin biosynthesis occurs in a subpopulation of mouse islet beta cells during pregnancy. Since the newly formed serotonin is rapidly released, this lactogen-induced beta cell function may serve local or endocrine tasks, the nature of which remains to be identified

The pancreatic beta cell surface proteome

The pancreatic beta cell is responsible for maintaining normoglycaemia by secreting an appropriate amount of insulin according to blood glucose levels. The accurate sensing of the beta cell extracellular environment is therefore crucial to this endocrine function and is transmitted via its cell surface proteome. Various surface proteins that mediate or affect beta cell endocrine function have been identified, including growth factor and cytokine receptors, transporters, ion channels and proteases, attributing important roles to surface proteins in the adaptive behaviour of beta cells in response to acute and chronic environmental changes. However, the largely unknown composition of the beta cell surface proteome is likely to harbour yet more information about these mechanisms and provide novel points of therapeutic intervention and diagnostic tools. This article will provide an overview of the functional complexity of the beta cell surface proteome and selected surface proteins, outline the mechanisms by which their activity may be modulated, discuss the methods and challenges of comprehensively mapping and studying the beta cell surface proteome, and address the potential of this interesting subproteome for diagnostic and therapeutic applications in human disease