6 research outputs found
Chapitre 14: Phytopathogènes et stratégies de contrôle en aquaponie
peer reviewedAmong the diversity of plant diseases occurring in aquaponics, soil-borne
pathogens, such as Fusarium spp., Phytophthora spp. and Pythium spp., are the most
problematic due to their preference for humid/aquatic environment conditions.
Phytophthora spp. and Pythium spp. which belong to the Oomycetes pseudo-fungi
require special attention because of their mobile form of dispersion, the so-called
zoospores that can move freely and actively in liquid water. In coupled aquaponics,
curative methods are still limited because of the possible toxicity of pesticides and
chemical agents for fish and beneficial bacteria (e.g. nitrifying bacteria of the
biofilter). Furthermore, the development of biocontrol agents for aquaponic use is
still at its beginning. Consequently, ways to control the initial infection and the
progression of a disease are mainly based on preventive actions and water physical
treatments. However, suppressive action (suppression) could happen in aquaponic
environment considering recent papers and the suppressive activity already
highlighted in hydroponics. In addition, aquaponic water contains organic matter
that could promote establishment and growth of heterotrophic bacteria in the system
or even improve plant growth and viability directly. With regards to organic
hydroponics (i.e. use of organic fertilisation and organic plant media), these bacteria
could act as antagonist agents or as plant defence elicitors to protect plants from
diseases. In the future, research on the disease suppressive ability of the aquaponic
biotope must be increased, as well as isolation, characterisation and formulation of
microbial plant pathogen antagonists. Finally, a good knowledge in the rapid
identification of pathogens, combined with control methods and diseases monitoring,
as recommended in integrated plant pest management, is the key to an efficient
control of plant diseases in aquaponics.Cos
Bacteriological quality of effluent submitted consecutively to a macrofiltration and ultraviolet light systems in the Tunisian conditions
Impact of Fishmeal Replacement in Diets for Gilthead Sea Bream (Sparus aurata) on the Gastrointestinal Microbiota Determined by Pyrosequencing the 16S rRNA Gene
Recent studies have demonstrated the impact of diet on microbiota composition, but the essential need for the optimization of production rates and costs forces farms and aquaculture production to carry out continuous dietary tests. In order to understand the effect of total fishmeal replacement by vegetable-based feed in the sea bream (Sparus aurata), the microbial composition of the stomach, foregut, midgut and hindgut was analysed using high-throughput 16S rDNA sequencing, also considering parameters of growth, survival and nutrient utilisation indices.A total of 91,539 16S rRNA filtered-sequences were analysed, with an average number of 3661.56 taxonomically assigned, high-quality sequences per sample. The dominant phyla throughout the whole gastrointestinal tract were Actinobacteria, Protebacteria and Firmicutes. A lower diversity in the stomach in comparison to the other intestinal sections was observed. The microbial composition of the Recirculating Aquaculture System was totally different to that of the sea bream gastrointestinal tract. Total fishmeal replacement had an important impact on microbial profiles but not on diversity. Streptococcus (p-value: 0.043) and Photobacterium (p-value: 0.025) were highly represented in fish fed with fishmeal and vegetable-meal diets, respectively. In the stomach samples with the vegetable diet, reads of chloroplasts and mitochondria from vegetable dietary ingredients were rather abundant. Principal Coordinate Analysis showed a clear differentiation between diets in the microbiota present in the gut, supporting the presence of specific bacterial consortia associated with the diet.Although differences in growth and nutritive parameters were not observed, a negative effect of the vegetable diet on the survival rate was determined. Further studies are required to shed more light on the relationship between the immune system and sea bream gastrointestinal tract microbiota and should consider the modulation of the microbiota to improve the survival rate and nutritive efficacy when using plant-based diets