Morphological traits and density of foundation species modulate a facilitation cascade in Australian mangroves.

Facilitation cascades are critical to the maintenance of biodiversity in a variety of habitats. Through a series of two experiments, we examined how the morphological traits and density of interacting foundation species influence the establishment and persistence of a facilitation cascade in temperate Australian mangrove forests. In this system, mangrove pneumatophores trap the free-living alga, Hormosira banksii, which, in turn, supports dense and diverse assemblages of epifaunal mollusks. The first experiment, which manipulated pneumatophore height and density, revealed that these two traits each had additive negative effects on the establishment, but additive positive effects on the persistence of the cascade. High densities of tall pneumatophores initially served as a physical barrier to algal colonization of pneumatophore plots, but over the longer-term enhanced the retention of algae. The increased algal biomass, in turn, facilitating epifaunal colonization. The second experiment demonstrated that the retention of algae by pneumatophores was influenced more by algal thallus length than vesicle diameter, and this effect occurred independent of pneumatophore height. Our study has extended facilitation theory by showing that the morphological traits and density of basal and intermediary facilitators influence both the establishment and persistence of facilitation cascades. Hence, attempts to use foundation species as a tool for restoration will require an understanding not only of the interactions among these, but also of the key traits that modify interrelationships

An unusual case of pancreatic fistula.

We report an unusual case of a pancreatic fistula communicating with an appendicectomy wound. This occurred following an episode of acute haemorrhagic pancreatitis. The patient was initially admitted with signs and symptoms indicating appendicitis and went to theatre for an open appendicectomy. However, this did not resolve his symptoms and a laparotomy was performed the next day revealing haemorrhagic pancreatitis. He endured a stormy post-operative course, the cause of which was found to be an external pancreatic fistula with discharge of amylase-rich fluid from the Lanz incision. A trial of conservative management failed despite multiple percutaneous drainage procedures and treatment with broad-spectrum antibiotics. After a second opinion was sought, it was decided to fit a roux loop anastomosis between the head of the pancreas and the duodenum to divert the fistulous fluid. This procedure was a success and the patient remains well 2 years later

Accuracy and computational efficiency of 2D urban surface flood modelling based on cellular automata

There is an emerging abundance freely available of high resolution (one meter or less) LIDAR data due to the advent of remote sensing, which enables wider applications of detailed flood risk modelling and analysis. Digital terrain surface data often comes in raster form, i.e., a square regular grid, and often requires conversion into a specific computational mesh for two-dimensional (2D) flood modelling that adopts triangular irregular meshes. 2D modelling of flood water movement through urban areas requires resolution of complex flow paths around buildings, which requires both high accuracy and computational efficiency. Water distribution and Wastewater systems in the UK contain over 700,000 km of water distribution and sewer pipes, which represents a large risk exposure from flooding caused by sewer surcharging or distribution pipe breaks. This makes it important for utilities to understand and predict where clean or dirty water flows will be directed when they leave the system. In order to establish risk assessment many thousands of simulations may be required calling for the most computational efficient models possible. Cellular Automata (CA) represents a method of running simulations based on a regular square grid, thus saving set-up time of configuring the terrain data into an irregular triangular mesh. It also offers a more uniform memory pattern for very fast modern, highly parallel hardware, such as general purpose graphical processing units (GPGPU). In this paper the performance of the CADDIES, a CA platform and associate flood modelling software caFloodPro, using a square regular grid and Von Neumann neighbourhood, is compared to industry standard software using triangular irregular meshes for similar resolutions. A minimum time step is used to control the computational complexity of the algorithm, which then creates a trade-off between the processing speeds of simulations and the accuracy resulting from the limitations used within the local rule to cope with relatively large time steps. This study shows that using CA based methods on regular square grids offers process speed increases in terms of 5-20 times over that of the industry standard software using irregular triangular meshes, while maintaining 98-99% flooding extent accuracy.This is the final version of the article. Available from Elsevier via the DOI in this record.There is an emerging abundance freely available of high resolution (one meter or less) LIDAR data due to the advent of remote sensing, which enables wider applications of detailed flood risk modelling and analysis. Digital terrain surface data often comes in raster form, i.e., a square regular grid, and often requires conversion into a specific computational mesh for two-dimensional (2D) flood modelling that adopts triangular irregular meshes. 2D modelling of flood water movement through urban areas requires resolution of complex flow paths around buildings, which requires both high accuracy and computational efficiency. Water distribution and Wastewater systems in the UK contain over 700,000 km of water distribution and sewer pipes, which represents a large risk exposure from flooding caused by sewer surcharging or distribution pipe breaks. This makes it important for utilities to understand and predict where clean or dirty water flows will be directed when they leave the system. In order to establish risk assessment many thousands of simulations may be required calling for the most computational efficient models possible. Cellular Automata (CA) represents a method of running simulations based on a regular square grid, thus saving set-up time of configuring the terrain data into an irregular triangular mesh. It also offers a more uniform memory pattern for very fast modern, highly parallel hardware, such as general purpose graphical processing units (GPGPU). In this paper the performance of the CADDIES, a CA platform and associate flood modelling software caFloodPro, using a square regular grid and Von Neumann neighbourhood, is compared to industry standard software using triangular irregular meshes for similar resolutions. A minimum time step is used to control the computational complexity of the algorithm, which then creates a trade-off between the processing speeds of simulations and the accuracy resulting from the limitations used within the local rule to cope with relatively large time steps. This study shows that using CA based methods on regular square grids offers process speed increases in terms of 5-20 times over that of the industry standard software using irregular triangular meshes, while maintaining 98-99% flooding extent accuracy

The proper motion of HV2112: A TZO candidate in the SMC

The candidate Thorne-\.Zytkow object (T\.ZO), HV2112, is becoming a well-studied if enigmatic object. A key point of its candidacy as a T\.ZO is whether or not it resides in the Small Magellanic Cloud (SMC). HV2112 has detections in a series of photometric catalogues which have resulted in contradictory estimates of its proper motion and, therefore, its membership within the SMC. This letter seeks to resolve the issue of the SMC membership of HV2112 through a reanalysis of extant photometric data. We also demonstrate the difficulties and downfalls inherent in considering a range of catalogue proper motions. We conclude that the proper motion, and associated ancillary radial velocity, positional and photometric properties, are fully consistent with HV2112 being within the SMC and thus it remains a candidate T\.ZO.This work is based on observations collected at the European Organisation for Astronomical Research in the Southern Hemisphere under ESO programme(s) 179.B-2003 and was partly supported by the European Union FP7 programme through ERC grant number 320360. RGI thanks the STFC for funding for his Rutherford fellowship. CAT thanks Churchill College for his fellowship. This research has made use of the VizieR catalogue access tool (A&AS, 143, 23), the Aladin sky atlas and the SIMBAD data base developed and operated at CDS, Strasbourg, France. The Digitized Sky Surveys (DSS) were produced at the Space Telescope Science Institute under US Government grant NAG W-2166.This is the final version of the article. It first appeared from Oxford University Press via http://dx.doi.org/10.1093/mnrasl/slw03

Effect of floor type on the performance, physiological and behavioural responses of finishing beef steers

peer-reviewedBackground:The study objective was to investigate the effect of bare concrete slats (Control), two types of mats [(Easyfix mats (mat 1) and Irish Custom Extruder mats (mat 2)] fitted on top of concrete slats, and wood-chip to simulate deep bedding (wood-chip placed on top of a plastic membrane overlying the concrete slats) on performance, physiological and behavioral responses of finishing beef steers. One-hundred and forty-four finishing steers (503 kg; standard deviation 51.8 kg) were randomly assigned according to their breed (124 Continental cross and 20 Holstein–Friesian) and body weight to one of four treatments for 148 days. All steers were subjected to the same weighing, blood sampling (jugular venipuncture), dirt and hoof scoring pre study (day 0) and on days 23, 45, 65, 86, 107, 128 and 148 of the study. Cameras were fitted over each pen for 72 h recording over five periods and subsequent 10 min sampling scans were analysed. Results: Live weight gain and carcass characteristics were similar among treatments. The number of lesions on the hooves of the animals was greater (P < 0.05) on mats 1 and 2 and wood-chip treatments compared with the animals on the slats. Dirt scores were similar for the mat and slat treatments while the wood-chip treatment had greater dirt scores. Animals housed on either slats or wood-chip had similar lying times. The percent of animals lying was greater for animals housed on mat 1 and mat 2 compared with those housed on concrete slats and wood chips. Physiological variables showed no significant difference among treatments. Conclusions: In this exploratory study, the performance or welfare of steers was not adversely affected by slats, differing mat types or wood-chip as underfoot material

A frequentist framework of inductive reasoning

Reacting against the limitation of statistics to decision procedures, R. A. Fisher proposed for inductive reasoning the use of the fiducial distribution, a parameter-space distribution of epistemological probability transferred directly from limiting relative frequencies rather than computed according to the Bayes update rule. The proposal is developed as follows using the confidence measure of a scalar parameter of interest. (With the restriction to one-dimensional parameter space, a confidence measure is essentially a fiducial probability distribution free of complications involving ancillary statistics.) A betting game establishes a sense in which confidence measures are the only reliable inferential probability distributions. The equality between the probabilities encoded in a confidence measure and the coverage rates of the corresponding confidence intervals ensures that the measure's rule for assigning confidence levels to hypotheses is uniquely minimax in the game. Although a confidence measure can be computed without any prior distribution, previous knowledge can be incorporated into confidence-based reasoning. To adjust a p-value or confidence interval for prior information, the confidence measure from the observed data can be combined with one or more independent confidence measures representing previous agent opinion. (The former confidence measure may correspond to a posterior distribution with frequentist matching of coverage probabilities.) The representation of subjective knowledge in terms of confidence measures rather than prior probability distributions preserves approximate frequentist validity.Comment: major revisio

A new rhynchocephalian from the late jurassic of Germany with a dentition that is unique amongst tetrapods.

Rhynchocephalians, the sister group of squamates (lizards and snakes), are only represented by the single genus Sphenodon today. This taxon is often considered to represent a very conservative lineage. However, rhynchocephalians were common during the late Triassic to latest Jurassic periods, but rapidly declined afterwards, which is generally attributed to their supposedly adaptive inferiority to squamates and/or Mesozoic mammals, which radiated at that time. New finds of Mesozoic rhynchocephalians can thus provide important new information on the evolutionary history of the group. A new fossil relative of Sphenodon from the latest Jurassic of southern Germany, Oenosaurus muehlheimensis gen. et sp. nov., presents a dentition that is unique amongst tetrapods. The dentition of this taxon consists of massive, continuously growing tooth plates, probably indicating a crushing dentition, thus representing a previously unknown trophic adaptation in rhynchocephalians. The evolution of the extraordinary dentition of Oenosaurus from the already highly specialized Zahnanlage generally present in derived rhynchocephalians demonstrates an unexpected evolutionary plasticity of these animals. Together with other lines of evidence, this seriously casts doubts on the assumption that rhynchocephalians are a conservative and adaptively inferior lineage. Furthermore, the new taxon underlines the high morphological and ecological diversity of rhynchocephalians in the latest Jurassic of Europe, just before the decline of this lineage on this continent. Thus, selection pressure by radiating squamates or Mesozoic mammals alone might not be sufficient to explain the demise of the clade in the Late Mesozoic, and climate change in the course of the fragmentation of the supercontinent of Pangaea might have played a major role

Coastal connectivity and spatial subsidy from a microbial perspective

© 2016 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. The transfer of organic material from one coastal environment to another can increase production in recipient habitats in a process known as spatial subsidy. Microorganisms drive the generation, transformation, and uptake of organic material in shallow coastal environments, but their significance in connecting coastal habitats through spatial subsidies has received limited attention. We address this by presenting a conceptual model of coastal connectivity that focuses on the flow of microbially mediated organic material in key coastal habitats. Our model suggests that it is not the difference in generation rates of organic material between coastal habitats but the amount of organic material assimilated into microbial biomass and respiration that determines the amount of material that can be exported from one coastal environment to another. Further, the flow of organic material across coastal habitats is sensitive to environmental change as this can alter microbial remineralization and respiration rates. Our model highlights microorganisms as an integral part of coastal connectivity and emphasizes the importance of including a microbial perspective in coastal connectivity studies