21 research outputs found
Effects of Soil Types and Fertilizers on Growth, Yield, and Quality of Edible Amaranthus tricolor lines in Okinawa, Japan
Soil types and fertilizer regimes were evaluated on growth, yield, and quality of Amaranthus tricolor lines, IB (India Bengal), TW (Taiwan), BB (Bangladesh B), and BC (Bangladesh C) in developing management practices in Okinawa. Growth and yield of all amaranth lines were higher in gray soil (pH 8.4) than in dark red soil (pH 6.6) and red soil (pH 5.4). The combined NPK fertilizer resulted in highest growth parameters and yield of amaranths in all soils. Nitrogen fertilizer alone did not affect growth parameters and yield of amaranths in dark red and red soils. Growth parameters and yield increased similarly with the 30, 40, and 50 g m−2 of NPK fertilizer in BB line, and with the 20, 30, 40, and 50 g m−2 in BC line. Agronomic efficiency of NPK fertilizer at 50 g m−2 was not prominent on the amaranths, compared to the fertilizer at 40 g m−2. Amaranth lines had higher Na in dark red and red soils, while K and Mg in gray soil, Ca in gray and red soils, and Fe in dark red soil. The NPK fertilizer resulted in higher Na, Ca, Mg, and P in BB line in glasshouse. These minerals in BB line were not clearly affected, but in BC line were lower with NPK fertilizer at 20–50 g m−2 in field. These studies indicate that gray soil is best for amaranth cultivation and combined NPK fertilizer at 20–40 g m−2 is effective in gray soil in Okinawa for higher yield and minerals of amaranth
Нарушение метилирования ДНК при злокачественных новообразованиях
DNA methylation is a chromatin modification that plays an important role in the epigenetic regulation of gene expression. Changes in DNA methylation patterns are characteristic of many malignant neoplasms. DNA methylation is occurred by DNA methyltransferases (DNMTs), while demethylation is mediated by TET family proteins. Mutations and changes in the expression profile of these enzymes lead to DNA hypo- and hypermethylation and have a strong impact on carcinogenesis. In this review, we considered the key aspects of the mechanisms of regulation of DNA methylation and demethylation, and also analyzed the role of DNA methyltransferases and TET family proteins in the pathogenesis of various malignant neoplasms.During the preparation of the review, we used the following biomedical literature information bases: Scopus (504), PubMed (553), Web of Science (1568), eLibrary (190). To obtain full-text documents, the electronic resources of PubMed Central (PMC), Science Direct, Research Gate, CyberLeninka were used. To analyze the mutational profile of epigenetic regulatory enzymes, we used the cBioportal portal (https://www.cbioportal.org / ), data from The AACR Project GENIE Consortium (https://www.mycancergenome.org / ), COSMIC, Clinvar, and The Cancer Genome Atlas (TCGA).Метилирование ДНК представляет собой модификацию хроматина, которая играет важную роль в эпигенетической регуляции экспрессии генов. Изменение паттернов метилирования ДНК характерно для многих злокачественных новообразований. Метилирование ДНК осуществляется ДНК-метилтрансферазами (DNMTs), в то время как деметилирование происходит под действием метилцитозиновых диоксигеназ, или белков семейства TET. Мутации и изменение профиля экспрессии данных ферментов, приводящие к гипо- и гиперметилированию ДНК, могут оказывать сильное влияние на канцерогенез.В обзоре рассмотрены ключевые аспекты механизмов регуляции метилирования и деметилирования ДНК, а также проведен анализ роли ДНК-метилтрансфераз и белков семейства ТЕТ в патогенезе различных злокачественных новообразований.При подготовке обзора были использованы информационные базы биомедицинской литературы Scopus (504), PubMed (553), Web of Science (1568), eLibrary (190), для получения полнотекстовых документов – электронные ресурсы PubMed Central (PMC), Science Direct, Research Gate, КиберЛенинка, для анализа мутационного профиля эпигенетических регуляторных ферментов – портал cBioportal (https://www.cbioportal.org / ), данные проекта The AACR Project GENIE Consortium (https://www.mycancergenome.org / ), базы данных COSMIC, Clinvar и Атласа генома рака (The Cancer Genome Atlas, TCGA)
EPIGENETIC EFFECTS OF ENZASTAURIN – A NEW ASPECT IN THE MECHANISM OF ACTION OF AN ANTICANCER DRUG FROM PROTEIN KINASE INHIBITORS
The purpose of the study was to analyze the ability of five antitumor drugs from the pharmaceutical group of protein kinase inhibitors (gefitinib, imatinib, pazopanib, ponatinib and enzastaurin) to reactivate the expression of the epigenetically silenced GFP in HeLa TI cells, and to estimate the effect of epigenetically active drugs on: 1) acetylation and methylation of histones H3 and H4; 2) integral DNA methylation; 3) activity of HAT and HDAC1 enzymes; 4) expression levels of the genes encoding epigenetic regulation enzymes (DNMT1, DNMT3A, DNMT3B; SIRT1, HDAC1; SETD1A, SETD1B, SUV420H1, SUV420H2, SUV39H1, SUV39H2). Material and Methods. The epigenetic activity of antitumor drugs was determined using the HeLa TI test system, a population of HeLa cells with the retroviral vector containing the epigenetically silenced GFP. The level of integral DNA methylation was analyzed using MspI/HpaII methyl-sensitive restriction analysis. Histone modifications were analyzed by Western blotting with antibodies to acetylated and methylated histones H3 and H4. The total activity of HAT enzymes was analyzed using Histone Acetyltransferase Activity Assay Kit. Expression of the epigenetic enzyme genes was analyzed using real-time quantitative RT-PCR. Results. It was shown that only the enzyme inhibitor Cβ protein kinase enzastaurin had the ability to reactivate the expression of epigenetically silenced GFP in the HeLa TI cells. We showed that under the action of enzastaurin, the level of integral DNA methylation and expression of DNMT3A and DNMT3B DNA methyltransferase genes decreased. It was also found that enzastaurin reduced the expression levels of histone deacetylases HDAC1 and SIRT1, but did not affect the activity and expression levels of histone acetylases, the level of histone methylation (H3K4me3, H3K9me3, H3K27me3, H4K20me3), and the level of expression of the histone methyltransferases (SUV39H1, SUV39H2, SUV420H1, SUV420H2, SETD1A и SETD1B). Conclusion. The data obtained are important for clarifying the mechanisms of action of 5 protein kinase inhibitors, in particular with respect to enzastaurin, the protein kinase Cβ inhibitor, for which the ability to reactivate epigenetically silent genes due to the effect on DNA methylation and histone acetylation was demonstrated