Allosteric HIV-1 integrase inhibitors lead to premature degradation of the viral RNA genome and integrase in target cells

Recent evidence indicates that inhibition of HIV-1 integrase (IN) binding to the viral RNA genome by allosteric integrase inhibitors (ALLINIs) or through mutations within IN yields aberrant particles in which the viral ribonucleoprotein complexes (vRNPs) are eccentrically localized outside the capsid lattice. These particles are noninfectious and are blocked at an early reverse transcription stage in target cells. However, the basis of this reverse transcription defect is unknown. Here, we show that the viral RNA genome and IN from ALLINI-treated virions are prematurely degraded in target cells, whereas reverse transcriptase remains active and stably associated with the capsid lattice. The aberrantly shaped cores in ALLINI-treated particles can efficiently saturate and be degraded by a restricting TRIM5 protein, indicating that they are still composed of capsid proteins arranged in a hexagonal lattice. Notably, the fates of viral core components follow a similar pattern in cells infected with eccentric particles generated by mutations within IN that inhibit its binding to the viral RNA genome. We propose that IN-RNA interactions allow packaging of both the viral RNA genome and IN within the protective capsid lattice to ensure subsequent reverse transcription and productive infection in target cells. Conversely, disruption of these interactions by ALLINIs or mutations in IN leads to premature degradation of both the viral RNA genome and IN, as well as the spatial separation of reverse transcriptase from the viral genome during early steps of infection. © 2017 American Society for Microbiology

Solvable Models of Domain Walls in N=1 Supergravity

A class of exactly solvable models of domain walls are worked out in D=4 ${\cal N}=1$ supergravity. We develop a method to embed globally supersymmetric theories with exact BPS domain wall solutions into supergravity, by introducing a gravitationally deformed superpotential. The gravitational deformation is natural in the spirit of maintaining the K\"ahler invariance. The solutions of the warp factor and the Killing spinor are also obtained. We find that three distinct behaviors of warp factors arise depending on the value of a constant term in the superpotential : exponentially decreasing in both sides of the wall, flat in one side and decreasing in the other, and increasing in one side and decreasing in the other. Only the first possibility gives the localized massless graviton zero mode. Models with multi-walls and models with runaway vacua are also discussed.Comment: 10 pages, 3 figures; Misprints in three formulas are correcte

A standardisation framework for bio‐logging data to advance ecological research and conservation

Bio‐logging data obtained by tagging animals are key to addressing global conservation challenges. However, the many thousands of existing bio‐logging datasets are not easily discoverable, universally comparable, nor readily accessible through existing repositories and across platforms, slowing down ecological research and effective management. A set of universal standards is needed to ensure discoverability, interoperability and effective translation of bio‐logging data into research and management recommendations. We propose a standardisation framework adhering to existing data principles (FAIR: Findable, Accessible, Interoperable and Reusable; and TRUST: Transparency, Responsibility, User focus, Sustainability and Technology) and involving the use of simple templates to create a data flow from manufacturers and researchers to compliant repositories, where automated procedures should be in place to prepare data availability into four standardised levels: (a) decoded raw data, (b) curated data, (c) interpolated data and (d) gridded data. Our framework allows for integration of simple tabular arrays (e.g. csv files) and creation of sharable and interoperable network Common Data Form (netCDF) files containing all the needed information for accuracy‐of‐use, rightful attribution (ensuring data providers keep ownership through the entire process) and data preservation security. We show the standardisation benefits for all stakeholders involved, and illustrate the application of our framework by focusing on marine animals and by providing examples of the workflow across all data levels, including filled templates and code to process data between levels, as well as templates to prepare netCDF files ready for sharing. Adoption of our framework will facilitate collection of Essential Ocean Variables (EOVs) in support of the Global Ocean Observing System (GOOS) and inter‐governmental assessments (e.g. the World Ocean Assessment), and will provide a starting point for broader efforts to establish interoperable bio‐logging data formats across all fields in animal ecology

Gravity localization with a domain wall junction in six dimensions

We study gravity localization in the context of a six-dimensional gravity model coupled with complex scalar fields. With a supergravity-motivated scalar potential, we show that the domain wall junction solutions localize a four-dimensional massless graviton under an assumption on the wall profile. We find that unlike the global supersymmetric model, contributions to the junction tension cancel locally with gravitational contributions. The wall tension vanishes due to the metric suppression.Comment: Latex, 13 pages, a paragraph and references added, typos correcte

Diving into the vertical dimension of elasmobranch movement ecology

Knowledge of the three-dimensional movement patterns of elasmobranchs is vital to understand their ecological roles and exposure to anthropogenic pressures. To date, comparative studies among species at global scales have mostly focused on horizontal movements. Our study addresses the knowledge gap of vertical movements by compiling the first global synthesis of vertical habitat use by elasmobranchs from data obtained by deployment of 989 biotelemetry tags on 38 elasmobranch species. Elasmobranchs displayed high intra- and interspecific variability in vertical movement patterns. Substantial vertical overlap was observed for many epipelagic elasmobranchs, indicating an increased likelihood to display spatial overlap, biologically interact, and share similar risk to anthropogenic threats that vary on a vertical gradient. We highlight the critical next steps toward incorporating vertical movement into global management and monitoring strategies for elasmobranchs, emphasizing the need to address geographic and taxonomic biases in deployments and to concurrently consider both horizontal and vertical movements

The peculiar Of?p stars of the Magellanic Clouds

The Of?p category gathers strongly magnetic massive stars which exhibit rotationally modulated spectral and photometric changes. Thanks to OGLE data, we investigated the photometric behaviour of five candidate Of?p stars in the Magellanic Clouds, revealing their variability. We combined these results to spectroscopic and spectropolarimetric investigations to further support the hypothesis that these are strongly magnetized O stars, analogous to the Of?p stars in the Galaxy