Source apportionment of atmospheric trace gases and particulate matter: comparison of log-ratio and traditional approaches

In this paper we compare multivariate methods using both traditional approaches, which ignore issues of closure and provide relatively simple methods to deal with censored or missing data, and log-ratio methods to determine the sources of trace constituents in the atmosphere. The data set examined was collected from April to July 2008 at a sampling site near Woods Hole, Massachusetts, along the northeastern United States Atlantic coastline. The data set consists of trace gas mixing ratios (O3, SO2, NOx, elemental mercury [Hgo], and reactive gaseous mercury [RGM]), and concentrations of trace elements in fine (<2.5 μm) particulate matter (Al, As, Ba, Ca, Cd, Ce, Co, Cs, Fe, Ga, Hg, K, La, Mg, Mn, Na, P, Pb, Rb, Sb, Sr, Th, Ti, V, Y, and Zn) with varying percentages of censored values for each species. The data were separated into two subcompositions: s1, which is comprised by RGM and particulate Hg (HgP), which are both highly censored; and s2 which includes all of the trace elements associated with particulate matter except Hg, and the trace gases O3, SO2, NOx, and Hgo. Principal factor analysis (PFA) was successful in determining the primary sources for constituents in s2 using both traditional and log-ratio approaches. Using the traditional approach, regression between factor scores and RGM and particulate Hg concentrations suggested that none of the sources identified during PFA led to positive contributions of either reactive mercury compound. This finding is counter to most conventional thinking and is likely specious, resulting from removal of censored data (up to >80% of the entire dataset) during the analysis. Log-ratio approaches to find relationships between constituents comprising s2 with RGM and HgP (i.e., s1) focused on log-ratio correlation and regression analyses of alr-transformed data, using Al as the divisor. Regression models accounted for large fractions of the variance in concentrations of the two reactive mercury species and generally agreed with conceptualizations about the formation and behavior of these species. An analysis of independence between the subcompositions demonstrated that the behavior of the two constituents comprising s1 (i.e., RGM and HgP) is dependent on changes in s2. Our findings suggest that although problems related to closure are largely unknown or ignored in the atmospheric sciences, much insight can be gleaned from the application of log-ratio methods to atmospheric chemistry data

Sedimentation processes in a coral reef embayment : Hanalei Bay, Kauai

This paper is not subject to U.S. copyright. The definitive version was published in Marine Geology 264 (2009): 140-151, doi:10.1016/j.margeo.2009.05.002.Oceanographic measurements and sediment samples were collected during the summer of 2006 as part of a multi-year study of coastal circulation and the fate of terrigenous sediment on coral reefs in Hanalei Bay, Kauai. The goal of this study was to better understand sediment dynamics in a coral reef-lined embayment where winds, ocean surface waves, and river floods are important processes. During a summer period that was marked by two wave events and one river flood, we documented significant differences in sediment trap collection rates and the composition, grain size, and magnitude of sediment transported in the bay. Sediment trap collection rates were well correlated with combined wave-current near-bed shear stresses during the non-flood periods but were not correlated during the flood. The flood's delivery of fine-grained sediment to the bay initially caused high turbidity and sediment collection rates off the river mouth but the plume dispersed relatively quickly. Over the next month, the flood deposit was reworked by mild waves and currents and the fine-grained terrestrial sediment was advected around the bay and collected in sediment traps away from the river mouth, long after the turbid surface plume was gone. The reworked flood deposits, due to their longer duration of influence and proximity to the seabed, appear to pose a greater long-term impact to benthic coral reef communities than the flood plumes themselves. The results presented here display how spatial and temporal differences in hydrodynamic processes, which result from variations in reef morphology and orientation, cause substantial variations in the deposition, residence time, resuspension, and advection of both reef-derived and fluvial sediment over relatively short spatial scales in a coral reef embayment