463 research outputs found
Effects of Arousal on Mouse Sensory Cortex Depend on Modality
Changes in arousal modulate the activity of mouse
sensory cortex, but studies in different mice and
different sensory areas disagree on whether this
modulation enhances or suppresses activity. We
measured this modulation simultaneously in multiple
cortical areas by imaging mice expressing voltagesensitive fluorescent proteins (VSFP). VSFP imaging
estimates local membrane potential across large
portions of cortex. We used temporal filters to predict local potential from running speed or from pupil
dilation, two measures of arousal. The filters provided good fits and revealed that the effects of
arousal depend on modality. In the primary visual
cortex (V1) and auditory cortex (Au), arousal caused
depolarization followed by hyperpolarization. In the
barrel cortex (S1b) and a secondary visual area
(LM), it caused only hyperpolarization. In all areas,
nonetheless, arousal reduced the phasic responses
to trains of sensory stimuli. These results demonstrate diverse effects of arousal across sensory cortex but similar effects on sensory responses
The impact of bilateral ongoing activity on evoked responses in mouse cortex
In the absence of external stimuli or overt behavior, the activity of the left and right cortical hemispheres shows fluctuations that are largely bilateral. Here we show that these fluctuations are largely responsible for the variability observed in cortical responses to sensory stimuli. Using widefield imaging of voltage and calcium signals, we measured activity in the cortex of mice performing a visual detection task. Bilateral fluctuations invested all areas, particularly those closest to the midline. Activity was less bilateral in the monocular region of primary visual cortex and, especially during task engagement, in secondary motor cortex. Ongoing bilateral fluctuations dominated unilateral visual responses, and interacted additively with them, explaining much of the variance in trial-by-trial activity. Even though these fluctuations occurred in regions necessary for the task, they did not affect detection behavior. We conclude that bilateral ongoing activity continues during visual stimulation and has a powerful additive impact on visual responses
Spin and chiral orderings of frustrated quantum spin chains
Ordering of frustrated S=1/2 and 1 XY and Heisenberg spin chains with the
competing nearest- and next-nearest-neighbor antiferromagnetic couplings is
studied by exact diagonalization and density-matrix renormalization-group
methods. It is found that the S=1 XY chain exhibits both gapless and gapped
`chiral' phases characterized by the spontaneous breaking of parity, in which
the long-range order parameter is a chirality, , whereas the spin correlation decays either
algebraically or exponentially. Such chiral phases are not realized in the
S=1/2 XY chain nor in the Heisenberg chains.Comment: 4 pages, 5 EPS-figures, LaTeX(RevTeX),to appear in J.Phys.Soc.Japa
Microscopic model for the magnetization plateaus in NH4CuCl3
A simple model consisting of three distinct dimer sublattices is proposed to
describe the magnetism of NH4CuCl3. It explains the occurrence of magnetization
plateaus only at 1/4 and 3/4 of the saturation magnetization. The field
dependence of the excitation modes observed by ESR measurements is also
explained by the model. The model predicts that the magnetization plateaus
should disappear under high pressure.Comment: 4 pages, 5 figures, REVTeX
Semi-classical description of the frustrated antiferromagnetic chain
The antiferromagnetic Heisenberg model on a chain with nearest and next
nearest neighbor couplings is mapped onto the nonlinear sigma model in
the continuum limit. In one spatial dimension this model is always in its
disordered phase and a gap opens to excited states. The latter form a doubly
degenerate spin-1 branch at all orders in . We argue that this feature
should be present in the spin-1 Heisenberg model itself. Exact diagonalizations
are used to support this claim. The inapplicability of this model to
half-integer spin chains is discussed.Comment: 19 pages (RevTeX 3.0), 6 PostScript figures appended (printing
instructions included), preprint CRPS-94-1
Structural Basis and Kinetics of Force-Induced Conformational Changes of an αA Domain-Containing Integrin
Integrin α(L)β₂ (lymphocyte function-associated antigen, LFA-1) bears force upon binding to its ligand intercellular adhesion molecule 1 (ICAM-1) when a leukocyte adheres to vascular endothelium or an antigen presenting cell (APC) during immune responses. The ligand binding propensity of LFA-1 is related to its conformations, which can be regulated by force. Three conformations of the LFA-1 αA domain, determined by the position of its α₇-helix, have been suggested to correspond to three different affinity states for ligand binding.The kinetics of the force-driven transitions between these conformations has not been defined and dynamically coupled to the force-dependent dissociation from ligand. Here we show, by steered molecular dynamics (SMD) simulations, that the αA domain was successively transitioned through three distinct conformations upon pulling the C-terminus of its α₇-helix. Based on these sequential transitions, we have constructed a mathematical model to describe the coupling between the αA domain conformational changes of LFA-1 and its dissociation from ICAM-1 under force. Using this model to analyze the published data on the force-induced dissociation of single LFA-1/ICAM-1 bonds, we estimated the force-dependent kinetic rates of interstate transition from the short-lived to intermediate-lived and from intermediate-lived to long-lived states. Interestingly, force increased these transition rates; hence activation of LFA-1 was accelerated by pulling it via an engaged ICAM-1.Our study defines the structural basis for mechanical regulation of the kinetics of LFA-1 αA domain conformational changes and relates these simulation results to experimental data of force-induced dissociation of single LFA-1/ICAM-1 bonds by a new mathematical model, thus provided detailed structural and kinetic characterizations for force-stabilization of LFA-1/ICAM-1 interaction
The plant organelles database (PODB): a collection of visualized plant organelles and protocols for plant organelle research
The plant organelles database (PODB; http://podb.nibb.ac.jp/Organellome) was built to promote a comprehensive understanding of organelle dynamics, including organelle function, biogenesis, differentiation, movement and interactions with other organelles. This database consists of three individual parts, the organellome database, the functional analysis database and external links to other databases and homepages. The organellome database provides images of various plant organelles that were visualized with fluorescent and nonfluorescent probes in various tissues of several plant species at different developmental stages. The functional analysis database is a collection of protocols for plant organelle research. External links give access primarily to other databases and Web pages with information on transcriptomes and proteomes. All the data and protocols in the organellome database and the functional analysis database are populated by direct submission of experimentally determined data from plant researchers and can be freely downloaded. Our database promotes the exchange of information between plant organelle researchers for the comprehensive study of the organelle dynamics that support integrated functions in higher plants. We would also appreciate contributions of data and protocols from all plant researchers to maximize the usefulness of the database
FRET Detection of Lymphocyte Function-Associated Antigen-1 Conformational Extension
Lymphocyte function-associated antigen 1 (LFA-1, CD11a/CD18, αLβ2-integrin) and its ligands are essential for adhesion between T-cells and antigen-presenting cells, formation of the immunological synapse, and other immune cell interactions. LFA-1 function is regulated through conformational changes that include the modulation of ligand binding affinity and molecular extension. However, the relationship between molecular conformation and function is unclear. Here fluorescence resonance energy transfer (FRET) with new LFA-1-specific fluorescent probes showed that triggering of the pathway used for T-cell activation induced rapid unquenching of the FRET signal consistent with extension of the molecule. Analysis of the FRET quenching at rest revealed an unexpected result that can be interpreted as a previously unknown LFA-1 conformation
Identification of the target self-antigens in reperfusion injury
Reperfusion injury (RI), a potential life-threatening disorder, represents an acute inflammatory response after periods of ischemia resulting from myocardial infarction, stroke, surgery, or trauma. The recent identification of a monoclonal natural IgM that initiates RI led to the identification of nonmuscle myosin heavy chain type II A and C as the self-targets in two different tissues. These results identify a novel pathway in which the innate response to a highly conserved self-antigen expressed as a result of hypoxic stress results in tissue destruction
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