7 research outputs found
A simple model for linked loci with recombination values depending on the genotype at one locus
Implementation of a simple thermodynamic sea ice scheme, SICE version 1.0-38h1, within the ALADIN–HIRLAM numerical weather prediction system version 38h1
Sea ice is an important factor affecting weather regimes, especially in polar
regions. A lack of its representation in numerical weather prediction (NWP)
systems leads to large errors. For example, in the HARMONIE–AROME model
configuration of the ALADIN–HIRLAM NWP system, the mean absolute error in
2 m temperature reaches 1.5 °C after 15 forecast hours for
Svalbard. A possible reason for this is that the sea ice properties are not
reproduced correctly (there is no prognostic sea ice temperature in the
model). Here, we develop a new simple sea ice scheme (SICE) and implement it
in the ALADIN–HIRLAM NWP system in order to improve the forecast quality in
areas influenced by sea ice. The new parameterization is evaluated using
HARMONIE–AROME experiments covering the Svalbard and Gulf of Bothnia areas
for a selected period in March–April 2013. It is found that using the SICE
scheme improves the forecast, decreasing the value of the 2 m temperature
mean absolute error on average by 0.5 °C in areas that are
influenced by sea ice. The new scheme is sensitive to the representation of
the form drag. The 10 m wind speed bias increases on average by
0.4 m s−1 when the form drag is not taken into account. Also, the
performance of SICE in March–April 2013 and December 2015–December 2016 was
studied by comparing modelling results with the sea ice surface temperature
products from MODIS and VIIRS. The warm bias (of approximately 5 °C)
of the new scheme is indicated for areas of thick ice in the Arctic. Impacts
of the SICE scheme on the modelling results and possibilities for future
improvement of sea ice representation in the ALADIN–HIRLAM NWP system are
discussed.</p
Forcing the SURFEX/Crocus snow model with combined hourly meteorological forecasts and gridded observations in southern Norway
In Norway, 30 % of the annual precipitation falls as snow.
Knowledge of the snow reservoir is therefore important for energy production
and water resource management. The land surface model SURFEX with the
detailed snowpack scheme Crocus (SURFEX/Crocus) has been run with a grid
spacing of 1 km over an area in southern Norway for 2 years (1 September
2014–31 August 2016). Experiments were carried out using two different
forcing data sets: (1)Â hourly forecasts from the operational weather forecast
model AROME MetCoOp (2.5 km grid spacing) including post-processed
temperature (500 m grid spacing) and wind, and (2) gridded hourly observations
of temperature and precipitation (1 km grid spacing) combined with
meteorological forecasts from AROME MetCoOp for the remaining weather
variables required by SURFEX/Crocus. We present an evaluation of the modelled
snow depth and snow cover in comparison to 30 point observations of snow depth
and MODIS satellite images of the snow-covered area. The evaluation
focuses on snow accumulation and snowmelt. Both experiments are capable of
simulating the snowpack over the two winter seasons, but there is an
overestimation of snow depth when using meteorological forecasts from AROME
MetCoOp (bias of 20 cm and RMSE of 56 cm), although the snow-covered area
in the melt season is better represented by this experiment. The
errors, when using AROME MetCoOp as forcing, accumulate over the snow season.
When using gridded observations, the simulation of snow depth is
significantly improved (the bias for this experiment is 7 cm and RMSE 28 cm),
but the spatial snow cover distribution is not well captured during the
melting season. Underestimation of snow depth at high elevations (due to the
low elevation bias in the gridded observation data set) likely causes the
snow cover to decrease too soon during the melt season, leading to
unrealistically little snow by the end of the season. Our results show that
forcing data consisting of post-processed NWP data (observations assimilated
into the raw NWP weather predictions) are most promising for snow
simulations, when larger regions are evaluated. Post-processed NWP data
provide a more representative spatial representation for both high mountains
and lowlands, compared to interpolated observations. There is, however, an
underestimation of snow ablation in both experiments. This is generally due
to the absence of wind-induced erosion of snow in the SURFEX/Crocus model,
underestimated snowmelt and biases in the forcing data
The 3-hour-interval prediction of ground-level temperature in South Korea using dynamic linear models
ML, PL, QL in Markov Chain Models
In many spatial and spatial-temporal models, and more generally in models with com- plex dependencies, it may be too difficult to carry out full maximum-likelihood (ML) analysis. Rem- edies include the use of pseudo-likelihood (PL) and quasi-likelihood (QL) (also called the composite likelihood). The present paper studies the ML, PL and QL methods for general Markov chain mod- els, partly motivated by the desire to understand the precise behaviour of the PL and QL methods in settings where this can be analysed. We present limiting normality results and compare perfor- mances in different settings. For Markov chain models, the PL and QL methods can be seen as maximum penalized likelihood methods. We find that QL is typically preferable to PL, and that it loses very little to ML, while sometimes earning in model robustness. It has also appeal and potential as a modelling tool. Our methods are illustrated for consonant-vowel transitions in poetry and for analysis of DNA sequence evolution-type models