157 research outputs found
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A perturbation-based susbtep method for coupled depletion Monte-Carlo codes
Coupled Monte Carlo (MC) methods are becoming widely used in reactor physics analysis and design. Many research groups therefore, developed their own coupled MC depletion codes. Typically, in such coupled code systems, neutron fluxes and cross sections are provided to the depletion module by solving a static neutron transport problem. These fluxes and cross sections are representative only of a specific time-point. In reality however, both quantities would change through the depletion time interval. Recently, Generalized Perturbation Theory (GPT) equivalent method that relies on collision history approach was implemented in Serpent MC code. This method was used here to calculate the sensitivity of each nuclide and reaction cross section due to the change in concentration of every isotope in the system. The coupling method proposed in this study also uses the substep approach, which incorporates these sensitivity coefficients to account for temporal changes in cross sections. As a result, a notable improvement in time dependent cross section behavior was obtained. The method was implemented in a wrapper script that couples Serpent with an external depletion solver. The performance of this method was compared with other existing methods. The results indicate that the proposed method requires substantially less MC transport solutions to achieve the same accuracy
Oneiric stress and safety and security at work: the discovery of a new universal symbol
Cox and Griffiths define as psychosocial risks at work “those aspects of the
planning, organization and management of work, which, along with their
environmental and social contexts, may affect mental and physical health of the
employees, directly or indirectly producing stress”. Therefore, a more effective
approach to occupational safety and security should include integrated risk
management through the identification of any work stress related problem. The
purpose of this paper is to analyze the possible correlation of risk at work with
the modification of sleep, and inside it, the specific function of dream activity
Cardiac circRNAs Arise Mainly From Constitutive Exons Rather Than Alternatively Spliced Exons
Circular RNAs (circRNAs) are a relatively new class of RNA molecules, and knowledge about their biogenesis and function is still in its infancy. It was recently shown that alternative splicing underlies the formation of circular RNAs (circRNA) arising from the Titin (TTN) gene. Since the main mechanism by which circRNAs are formed is still unclear, we hypothesized that alternative splicing, and in particular exon skipping, is a major driver of circRNA production. We performed RNA sequencing on human and mouse hearts, mapped alternative splicing events, and overlaid these with expressed circRNAs at exon-level resolution. In addition, we performed RNA sequencing on hearts of Rbm20 KO mice to address how important Rbm20-mediated alternative splicing is in the production of cardiac circRNAs. In human and mouse hearts, we show that cardiac circRNAs are mostly (~90%) produced from constitutive exons and less (~10%) from alternatively spliced exons. In Rbm20 KO hearts, we identified 38 differentially expressed circRNAs of which 12 were produced from the Ttn gene. Even though Ttn appeared the most prominent target of Rbm20 for circularization, we also detected Rbm20-dependent circRNAs arising from other genes including Fan1, Stk39, Xdh, Bcl2l13, and Sorbs1. Interestingly, only Ttn circRNAs seemed to arise from Rbm20-mediated skipped exons. In conclusion, cardiac circRNAs are mostly derived from constitutive exons, suggesting that these circRNAs are generated at the expense of their linear counterpart and that circRNA production impacts the accumulation of the linear mRNA
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MindTheDApp: A Toolchain for Complex Network-Driven Structural Analysis of Ethereum-based Decentralised Applications
This paper presents MindTheDApp, a toolchain designed specifically for the structural analysis of Ethereum-based Decentralized Applications (DApps), with a distinct focus on a complex network-driven approach. Unlike existing tools, our toolchain combines the power of ANTLR4 and Abstract Syntax Tree (AST) traversal techniques to transform the architecture and interactions within smart contracts into a specialized bipartite graph. This enables advanced network analytics to highlight operational efficiencies within the DApp’s architecture. The bipartite graph generated by the proposed tool comprises two sets of nodes: one representing smart contracts, interfaces, and libraries, and the other including functions, events, and modifiers. Edges in the graph connect functions to smart contracts they interact with, offering a granular view of interdependencies and execution flow within the DApp. This network-centric approach allows researchers and practitioners to apply complex network theory in understanding the robustness, adaptability, and intricacies of decentralized systems. Our work contributes to the enhancement of security in smart contracts by allowing the visualisation of the network, and it provides a deep understanding of the architecture and operational logic within DApps. Given the growing importance of smart contracts in the blockchain ecosystem and the emerging application of complex network theory in technology, our toolchain offers a timely contribution to both academic research and practical applications in the field of blockchain technology.10.13039/501100015595-Ethereum Foundation (Grant Number: FY23-1048
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A Preliminary Analysis of Software Metrics in Decentralised Applications
This study examines software metrics in decentralized applications (dApps) to analyze their structural and behavioral characteristics as they grow in complexity. Sixty dApps were categorized into Small (3 to 29 contracts), Medium (30 to 46 contracts), and Large (47 to 206 contracts) based on their contract count. Initial analysis showed a non-normal data distribution, leading to the use of Spearman's correlation method. Findings revealed that Medium dApps have strong correlations between metrics like 'Average Local Variables' and 'Maximum Local Variables', while Large dApps show higher correlations between 'Number of Functions' and 'State Variable Count', indicating more complex contract structures. The higher Coupling Between Objects (CBO) in large dApps suggests increased interactions with other contracts or libraries, potentially elevating security risks. These insights are valuable for developers and stakeholders in the blockchain and IoT sectors, aiding in understanding how dApps evolve with increasing complexity and the implications on software metric relationships.Ethereum Foundation grant FY23-1048
RBM20 Mutations Induce an Arrhythmogenic Dilated Cardiomyopathy Related to Disturbed Calcium Handling
BACKGROUND: Mutations in RBM20 (RNA-binding motif protein 20) cause a clinically aggressive form of dilated cardiomyopathy, with an increased risk of malignant ventricular arrhythmias. RBM20 is a splicing factor that targets multiple pivotal cardiac genes, such as Titin (TTN) and CAMK2D (calcium/calmodulin-dependent kinase II delta). Aberrant TTN splicing is thought to be the main determinant of RBM20-induced dilated cardiomyopathy, but is not likely to explain the increased risk of arrhythmias. Here, we investigated the extent to which RBM20 mutation carriers have an increased risk of arrhythmias and explore the underlying molecular mechanism
Staphylococcus aureus Keratinocyte Invasion Is Dependent upon Multiple High-Affinity Fibronectin-Binding Repeats within FnBPA
Staphylococcus aureus is a commensal organism and a frequent cause of skin and soft tissue infections, which can progress to serious invasive disease. This bacterium uses its fibronectin binding proteins (FnBPs) to invade host cells and it has been hypothesised that this provides a protected niche from host antimicrobial defences, allows access to deeper tissues and provides a reservoir for persistent or recurring infections. FnBPs contain multiple tandem fibronectin-binding repeats (FnBRs) which bind fibronectin with varying affinity but it is unclear what selects for this configuration. Since both colonisation and skin infection are dependent upon the interaction of S. aureus with keratinocytes we hypothesised that this might select for FnBP function and thus composition of the FnBR region. Initial experiments revealed that S. aureus attachment to keratinocytes is rapid but does not require FnBRs. By contrast, invasion of keratinocytes was dependent upon the FnBR region and occurred via similar cellular processes to those described for endothelial cells. Despite this, keratinocyte invasion was relatively inefficient and appeared to include a lag phase, most likely due to very weak expression of α5β1 integrins. Molecular dissection of the role of the FnBR region revealed that efficient invasion of keratinocytes was dependent on the presence of at least three high-affinity (but not low-affinity) FnBRs. Over-expression of a single high-affinity or three low-affinity repeats promoted invasion but not to the same levels as S. aureus expressing an FnBPA variant containing three high-affinity repeats. In summary, invasion of keratinocytes by S. aureus requires multiple high-affinity FnBRs within FnBPA, and given the importance of the interaction between these cell types and S. aureus for both colonisation and infection, may have provided the selective pressure for the multiple binding repeats within FnBPA
Serpent-OpenFOAM coupling for criticality accidents modelling -- Definition of a benchamrk for MSRs multiphysics modelling
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