38 research outputs found

    13CFLUX2--high-performance software suite for 13C-metabolic flux analysis

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    Summary: (13)C-based metabolic flux analysis ((13)C-MFA) is the state-of-the-art method to quantitatively determine in vivo metabolic reaction rates in microorganisms. 13CFLUX2 contains all tools for composing flexible computational (13)C-MFA workflows to design and evaluate carbon labeling experiments. A specially developed XML language, FluxML, highly efficient data structures and simulation algorithms achieve a maximum of performance and effectiveness. Support of multicore CPUs, as well as compute clusters, enables scalable investigations. 13CFLUX2 outperforms existing tools in terms of universality, flexibility and built-in features. Therewith, 13CFLUX2 paves the way for next-generation high-resolution (13)C-MFA applications on the large scale. Availability and implementation: 13CFLUX2 is implemented in C++ (ISO/IEC 14882 standard) with Java and Python add-ons to run under Linux/Unix. A demo version and binaries are available at www.13cflux.net. Contact: [email protected] or [email protected] Supplementary information: Supplementary data are available at Bioinformatics online

    Incidence and morphology of the brachioradialis accessorius muscle

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    A separate supernumerary muscle in the lateral cubital fossa originating from the humerus or brachioradialis and inserting into the radius, pronator teres or supinator muscle has been considered as a variation of the brachioradialis muscle (Dawson, 1822; Meckel, 1823; Lauth, 1830; Halbertsma, 1864; Gruber, 1868b; Testut, 1884; LeDouble, 1897; Spinner & Spinner, 1996). However, a similar description was used to report additional heads of the brachialis or biceps brachii muscles (Gruber, 1848; Wood, 1864, 1868; Macalister, 1864–66, 1966–69, 1875; Gruber, 1868a; Wolff-Heidegger, 1937). The innervation of these variant muscles would be a good tool to assign each variation to its associated muscle. Consequently, innervation by the radial nerve would indicate that it is a derivative of the humero–radialis group of muscles, while innervation by the musculocutaneous nerve would support it as a derivative of the anterior musculature of the arm (Rolleston, 1887; Lewis, 1989). However, no references to the innervation were found in the available literature. Therefore this study set out to establish the phylogenetic origin of the brachioradialis accessorius muscle and, with the help of its innervation, to determine its incidence and unreported detailed morphology
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