High genetic diversity of Vibrio cholerae in the European lake Neusiedler See is associated with intensive recombination in the reed habitat and the long-distance transfer of strains

Coastal marine Vibrio cholerae populations usually exhibit high genetic diversity. To assess the genetic diversity of abundant V. cholerae non-O1/non-O139 populations in the Central European lake Neusiedler See, we performed a phylogenetic analysis based on recA, toxR, gyrB and pyrH loci sequenced for 472 strains. The strains were isolated from three ecologically different habitats in a lake that is a hot-spot of migrating birds and an important bathing water. We also analyzed 76 environmental and human V. cholerae non-O1/non-O139 isolates from Austria and other European countries and added sequences of seven genome-sequenced strains. Phylogenetic analysis showed that the lake supports a unique endemic diversity of V. cholerae that is particularly rich in the reed stand. Phylogenetic trees revealed that many V. cholerae isolates from European countries were genetically related to the strains present in the lake belonging to statistically supported monophyletic clades. We hypothesize that the observed phenomena can be explained by the high degree of genetic recombination that is particularly intensive in the reed stand, acting along with the long distance transfer of strains most probably via birds and/or humans. Thus, the Neusiedler See may serve as a bioreactor for the appearance of new strains with new (pathogenic) properties

Analytical methods for lignocellulosic biomass structural polysaccharides

The use of lignocellulosic biomass has been postulated as a potential pathway toward diminishing global dependence on nonrenewable sources of chemicals and fuels. Before a specific feedstock can be selected for biochemical conversion into biofuels and bio-based chemicals, it must first be characterized to evaluate the chemical composition of the cell walls. Polysaccharides, specifically cellulose and hemicellulose, are often the focal point of these appraisals, since these constituents are the dominant substrates converted into monomeric sugars like glucose and xylose. These monosaccharides can be transformed, using microorganisms like yeast, into substances such as ethanol. Plant species containing abundant polysaccharides are highly desirable, as higher quantities of sugars should translate into larger end-product yields. Given the vast pool of potential feedstocks, qualitative and quantitative analytical methods are needed to assess cell wall polysaccharides. Many of these tools, such as wet chemical and chromatographic techniques, have been ubiquitously used for some time. Shortcomings in these analyses, however, prevent their usage in screening large sample sets for quintessential, high-yield, fuel-producing traits. This chapter briefly summarizes how analytical spectroscopy can lessen some of these limitations and how it has been utilized for polysaccharide analysis