122 research outputs found
The cosine law at the atomic scale: Toward realistic simulations of Knudsen diffusion
We propose to revisit the diffusion of atoms in the Knudsen regime in terms
of a complex dynamical reflection process. By means of molecular dynamics
simulation we emphasize the asymptotic nature of the cosine law of reflection
at the atomic scale, and carefully analyze the resulting strong correlations in
the reflection events. A dynamical interpretation of the accomodation
coefficient associated to the slip at the wall interface is also proposed.
Finally, we show that the first two moments of the stochastic process of
reflection non uniformly depend on the incident angle
Diffusion of a liquid nanoparticle on a disordered substrate
We perform molecular dynamic simulations of liquid nanoparticles deposited on
a disordered substrate. The motion of the nanoparticle is characterised by a
'stick and roll' diffusive process. Long simulation times (),
analysis of mean square displacements and stacking time distribution functions
demonstrate that the nanoparticle undergoes a normal diffusion in spite of long
sticking times. We propose a phenomenological model for the size and
temperature dependence of the diffusion coefficient in which the activation
energy scales as .Comment: Accepted for publication in Phys. Rev.
Orbital frustration at the origin of the magnetic behavior in LiNiO2
We report on the ESR, magnetization and magnetic susceptibility measurements
performed over a large temperature range, from 1.5 to 750 K, on high-quality
stoichiometric LiNiO2. We find that this compound displays two distinct
temperature regions where its magnetic behavior is anomalous. With the help of
a statistical model based on the Kugel'-Khomskii Hamiltonian, we show that
below T_of ~ 400 K, an orbitally-frustrated state characteristic of the
triangular lattice is established. This then gives a solution to the
long-standing controversial problem of the magnetic behavior in LiNiO2.Comment: 5 pages, 5 figures, RevTex, accepted in PR
Measuring kinetic coefficients by molecular dynamics simulation of zone melting
Molecular dynamics simulations are performed to measure the kinetic
coefficient at the solid-liquid interface in pure gold. Results are obtained
for the (111), (100) and (110) orientations. Both Au(100) and Au(110) are in
reasonable agreement with the law proposed for collision-limited growth. For
Au(111), stacking fault domains form, as first reported by Burke, Broughton and
Gilmer [J. Chem. Phys. {\bf 89}, 1030 (1988)]. The consequence on the kinetics
of this interface is dramatic: the measured kinetic coefficient is three times
smaller than that predicted by collision-limited growth. Finally,
crystallization and melting are found to be always asymmetrical but here again
the effect is much more pronounced for the (111) orientation.Comment: 8 pages, 9 figures (for fig. 8 : [email protected]). Accepted for
publication in Phys. Rev.
Chasing the Foxo3: Insights into its new mitochondrial lair in colorectal cancer landscape
Colorectal cancer (CRC) poses a formidable challenge in terms of molecular heterogeneity, as it involves a variety of cancer-related pathways and molecular changes unique to an individual’s tumor. On the other hand, recent advances in DNA sequencing technologies provide an unprecedented capacity to comprehensively identify the genetic alterations resulting in tumorigenesis, raising the hope that new therapeutic approaches based on molecularly targeted drugs may prevent the occurrence of chemoresistance. Regulation of the transcription factor FOXO3a in response to extracellular cues plays a fundamental role in cellular homeostasis, being part of the molecular machinery that drives cells towards survival or death. Indeed, FOXO3a is controlled by a range of external stimuli, which not only influence its transcriptional activity, but also affect its subcellular localization. These regulation mechanisms are mediated by cancer-related signaling pathways that eventually drive changes in FOXO3a post-translational modifications (e.g., phosphorylation). Recent results showed that FOXO3a is imported into the mitochondria in tumor cells and tissues subjected to metabolic stress and cancer therapeutics, where it induces expression of the mitochondrial genome to support mitochondrial metabolism and cell survival. The current review discusses the potential clinical relevance of multidrug therapies that drive cancer cell fate by regulating critical pathways converging on FOXO3a
Seeking critical nodes in digraphs
The Critical Node Detection Problem (CNDP) consists in finding the set of nodes, defined critical, whose removal maximally degrades the graph. In this work we focus on finding the set of critical nodes whose removal minimizes the pairwise connectivity of a direct graph (digraph). Such problem has been proved to be NP-hard, thus we need efficient heuristics to detect critical nodes in real-world applications. We aim at understanding which is the best heuristic we can apply to identify critical nodes in practice, i.e., taking into account time constrains and real-world networks. We present an in-depth analysis of several heuristics we ran on both real-world and on synthetic graphs. We define and evaluate two different strategies for each heuristic: standard and iterative. Our main findings show that an algorithm recently proposed to solve the CNDP and that can be used as heuristic for the general case provides the best results in real-world graphs, and it is also the fastest. However, there are few exceptions that are thoroughly analyzed and discussed. We show that among the heuristics we analyzed, few of them cannot be applied to very large graphs, when the iterative strategy is used, due to their time complexity. Finally, we suggest possible directions to further improve the heuristic providing the best results
Water jet rebounds on hydrophobic surfaces : a first step to jet micro-fluidics
When a water jet impinges upon a solid surface it produces a so called
hydraulic jump that everyone can observe in the sink of its kitchen. It is
characterized by a thin liquid sheet bounded by a circular rise of the surface
due to capillary and gravitational forces. In this phenomenon, the impact
induces a geometrical transition, from the cylindrical one of the jet to the
bi-dimensional one of the film. A true jet rebound on a solid surface, for
which the cylindrical geometry is preserved, has never been yet observed. Here
we experimentally demonstrate that a water jet can impact a solid surface
without being destabilized. Depending on the incident angle of the impinging
jet, its velocity and the degree of hydrophobicity of the substrate, the jet
can i) bounce on the surface with a fixed reflected angle, ii) land on it and
give rise to a supported jet or iii) be destabilized, emitting drops. Capillary
forces are predominant at the sub-millimetric jet scale considered in this
work, along with the hydrophobic nature of the substrate. The results presented
in this letter raise the fundamental problem of knowing why such capillary
hydraulic jump gives rise to this unexpected jet rebound phenomenon. This study
furthermore offers new and promising possibilities to handle little quantity of
water through "jet micro-fluidics
Phase-Field Approach for Faceted Solidification
We extend the phase-field approach to model the solidification of faceted
materials. Our approach consists of using an approximate gamma-plot with
rounded cusps that can approach arbitrarily closely the true gamma-plot with
sharp cusps that correspond to faceted orientations. The phase-field equations
are solved in the thin-interface limit with local equilibrium at the
solid-liquid interface [A. Karma and W.-J. Rappel, Phys. Rev. E53, R3017
(1996)]. The convergence of our approach is first demonstrated for equilibrium
shapes. The growth of faceted needle crystals in an undercooled melt is then
studied as a function of undercooling and the cusp amplitude delta for a
gamma-plot of the form 1+delta(|sin(theta)|+|cos(theta)|). The phase-field
results are consistent with the scaling law "Lambda inversely proportional to
the square root of V" observed experimentally, where Lambda is the facet length
and V is the growth rate. In addition, the variation of V and Lambda with delta
is found to be reasonably well predicted by an approximate sharp-interface
analytical theory that includes capillary effects and assumes circular and
parabolic forms for the front and trailing rough parts of the needle crystal,
respectively.Comment: 1O pages, 2 tables, 17 figure
Hexatic Order and Surface Ripples in Spherical Geometries
In flat geometries, two dimensional hexatic order has only a minor effect on
capillary waves on a liquid substrate and on undulation modes in lipid
bilayers. However, extended bond orientational order alters the long wavelength
spectrum of these ripples in spherical geometries. We calculate this frequency
shift and suggest that it might be detectable in lipid bilayer vesicles, at the
surface of liquid metals and in multielectron bubbles in liquid helium at low
temperatures. Hexatic order also leads to a shift in the threshold for the
fission instability induced in the later two systems by an excess of electric
charge.Comment: 5 pages, 1 figure; revised version; to appear in Phys. Rev. Let
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