Cell cycle alteration, apoptosis and response of leukemic cell lines to gamma radiation with high- and low-dose

Summary The aim of this work was to compare the effect of gamma radiation with sub-low dose-rate 1.8 mGy/min (SLDR), low dose-rate 3.9 mGy/min (LDR) and high dose-rate 0.6 Gy/min (HDR) on human leukemic cell lines with differing p53 status (HL-60, p53 deficient and MOLT-4, p53 wild) and to elucidate the importance of G2/M phase cell cycle arrest during irradiation. Radiosensitivity of HL-60 and MOLT-4 cells was determined by test of clonogenity. Decrease of dose-rate had no effect on radiosensitivity of MOLT-4 cells (D 0 for HDR 0.87 Gy, for LDR 0.78 Gy and for SLDR 0.70 Gy). In contrast, a significant increase of radioresistance after LDR irradiation was observed for p53 negative HL-60 cells (D 0 for HDR 2.20 Gy and for LDR 3.74 Gy). After an additional decrease of dose-rate (SLDR) D 0 value (2.92 Gy) was not significantly different from HDR irradiation. Considering the fact that during HDR the cells are irradiated in all phases of the cell cycle and during LDR mainly in the G2 phase, we have been unable to prove that the G2 phase is the most radiosensitive phase of the cell cycle of HL-60 cells. On the contrary, irradiation of cells in this phase induced damage reparation and increased radioresistance. When the dose-rate was lowered, approximately to 1.8 mGy/min, an opposite effect was detected, i.e. D 0 value decreased to 2.9 Gy. We have proved that during SLDR at first (dose up to 2.5 Gy) the cells accumulated in G2 phase, but then they entered mitosis or, if the cell damage was not sufficiently repaired, the cells entered apoptosis. The entry into mitosis has a radiosensibilizing effect

ÖSTEREICHER J: CD8+ natural killer cells have a potential of a sensitive and reliable biodosimetric marker in vitro. Physiol Res 55

Summary The aim of our work was to evaluate peripheral blood lymphocyte subsets as in vitro indicators of the received dose of ionizing radiation (biodosimetric markers) in the range of 3-20 Gy and to determine the appropriate time interval, during which a dose-dependent induction of apoptosis occurs upon γ irradiation. In lymphocyte subsets characterized by double color surface immunophenotyping, four-color flow cytometry was used for visualizing cell death-associated increase in superficial phosphatidylserine exposure and cytoplasmic membrane permeability by fluorinated Annexin V and propidium iodide, respectively. No differences between sham-treated and lethal dose (7 Gy)-irradiated samples were observed upon 6 h cultivation in vitro. Ten and 18 h later, about 50 % of lymphocytes were apoptotic, but only the minority of them was in the late apoptotic phase. The only difference in radioresistance of the CD4 + CD8 -and CD4 -CD8 + lymphocyte subsets was seen upon 2-day cultivation when huge depletion of intact cells and prevalence of the late apoptotic population became obvious. A dose-dependence study in 16 and 48 h cultures confirmed the effectiveness of major T cell subsets as biodosimetric indicators. On the other hand, the minor CD8 + subset of natural killer (NK) cells has been identified as a radiosensitive lymphocyte population the disappearance of which correlated with the received dose. We demonstrated that the CD3 -CD8 + NK subset can be used as a lethal/sublethal dose discriminator to 16 h cultivation. In addition, our data indicate that two-day cultivation followed by CD3/CD8 expression analysis in an intact lymphocyte population may provide a clue for low dosage biodosimetry

Molecular Characterization of Clinical Isolates of Human Immunodeficiency Virus Resistant to the Protease Inhibitor Darunavir ▿ †

Darunavir is the most recently approved human immunodeficiency virus (HIV) protease (PR) inhibitor (PI) and is active against many HIV type 1 PR variants resistant to earlier-generation PIs. Darunavir shows a high genetic barrier to resistance development, and virus strains with lower sensitivity to darunavir have a higher number of PI resistance-associated mutations than viruses resistant to other PIs. In this work, we have enzymologically and structurally characterized a number of highly mutated clinically derived PRs with high levels of phenotypic resistance to darunavir. With 18 to 21 amino acid residue changes, the PR variants studied in this work are the most highly mutated HIV PR species ever studied by means of enzyme kinetics and X-ray crystallography. The recombinant proteins showed major defects in substrate binding, while the substrate turnover was less affected. Remarkably, the overall catalytic efficiency of the recombinant PRs (5% that of the wild-type enzyme) is still sufficient to support polyprotein processing and particle maturation in the corresponding viruses. The X-ray structures of drug-resistant PRs complexed with darunavir suggest that the impaired inhibitor binding could be explained by change in the PR-inhibitor hydrogen bond pattern in the P2′ binding pocket due to a substantial shift of the aminophenyl moiety of the inhibitor. Recombinant virus phenotypic characterization, enzyme kinetics, and X-ray structural analysis thus help to explain darunavir resistance development in HIV-positive patients

Heyrovský Institute of Physical Chemistry

ABSTRACT It has been reported that physico-chemical properties of diamond surfaces are closely related to the surface chemisorbed species on the surface. Hydrogen chemisorption on a chemical vapor deposition grown diamond surface is well-known to be important for stabilizing diamond surface structures with sp 3 hybridization. It has been suggested that an H-chemisorbed structure is necessary to provide a negative electron affinity condition on the diamond surfaces. Negative electron affinity condition could change to a positive electron affinity by oxidation of the Hchemisorbed diamond surfaces. Oxidized diamond surfaces usually show characteristics completely different from those of the H-chemisorbed diamond surfaces. The unique electron affinity condition, or the surface potential, is strongly related to the chemisorbed species on diamond surfaces. The relationship between the surface chemisorption structure and the surface electrical properties, such as the surface potential of the diamond, has been modelled using DFT based calculations

Fluorescent Nanodiamonds: Effect of Surface Termination

ABSTRACT It has been reported that physico-chemical properties of diamond surfaces are closely related to the surface chemisorbed species on the surface. Hydrogen chemisorption on a chemical vapor deposition grown diamond surface is well-known to be important for stabilizing diamond surface structures with sp 3 hybridization. It has been suggested that an H-chemisorbed structure is necessary to provide a negative electron affinity condition on the diamond surfaces. Negative electron affinity condition could change to a positive electron affinity by oxidation of the Hchemisorbed diamond surfaces. Oxidized diamond surfaces usually show characteristics completely different from those of the H-chemisorbed diamond surfaces. The unique electron affinity condition, or the surface potential, is strongly related to the chemisorbed species on diamond surfaces. The relationship between the surface chemisorption structure and the surface electrical properties, such as the surface potential of the diamond, has been modelled using DFT based calculations

Application of advanced crystallization techniques on naughty proteins and their complexes

8th International School of Biological Crystallization (2023)When the conventional vapor-diffusion techniques of protein crystallization do not yield crystals of sufficient quality, it does not need to lead to hopelessness as well. Instead, we can apply advanced crystallization techniques such as capillary counter-diffusion and micro-seed matrix screening. We applied these methods to problematic proteins whose crystallization by basic methods was not successful. We selected proteins of our interest, whose revealed structure would be beneficial in addition to their use in validation of the advanced crystallization methods as tools for proteins resisting crystallization by more conventional crystallization methods. The protein targets specifically are: 1. Medicinally relevant human enzymes: purine nucleoside phosphorylases (PNP) in complex with inhibitors and cyclic GMP-AMP synthase (cGAS) 2. A representative of generally difficult-to-crystallize protein-DNA complexes: lactate-utilization repressor (LutR) from Bacillus subtilis in the complex with its DNA operator. Poster will present the results we have achieved in this still-going project. The project was supported by Mobility Plus project number of Czech Academy of Sciences (CSIC-22-02) and the i-LINK 2021 program of the Spanish National Research Council (CSIC) LINKC20027

Ninety-Nine Is Not Enough: Molecular Characterization of Inhibitor-Resistant Human Immunodeficiency Virus Type 1 Protease Mutants with Insertions in the Flap Region▿ †

While the selection of amino acid insertions in human immunodeficiency virus (HIV) reverse transcriptase (RT) is a known mechanism of resistance against RT inhibitors, very few reports on the selection of insertions in the protease (PR) coding region have been published. It is still unclear whether these insertions impact protease inhibitor (PI) resistance and/or viral replication capacity. We show that the prevalence of insertions, especially between amino acids 30 to 41 of HIV type 1 (HIV-1) PR, has increased in recent years. We identified amino acid insertions at positions 33 and 35 of the PR of HIV-1-infected patients who had undergone prolonged treatment with PIs, and we characterized the contribution of these insertions to viral resistance. We prepared the corresponding mutated, recombinant PR variants with or without insertions at positions 33 and 35 and characterized them in terms of enzyme kinetics and crystal structures. We also engineered the corresponding recombinant viruses and analyzed the PR susceptibility and replication capacity by recombinant virus assay. Both in vitro methods confirmed that the amino acid insertions at positions 33 and 35 contribute to the viral resistance to most of the tested PIs. The structural analysis revealed local structural rearrangements in the flap region and in the substrate binding pockets. The enlargement of the PR substrate binding site together with impaired flap dynamics could account for the weaker inhibitor binding by the insertion mutants. Amino acid insertions in the vicinity of the binding cleft therefore represent a novel mechanism of HIV resistance development