L'Auto-vélo : automobilisme, cyclisme, athlétisme, yachting, aérostation, escrime, hippisme / dir. Henri Desgranges

19 novembre 19111911/11/19 (A12,N4052)

Additional file 1: Figure S1. of Identification of genome-wide SNP-SNP interactions associated with important traits in chicken

Phenotypic distribution of the carcass and growth traits in the lean and fat lines, respectively. The red and light blue bars represent the traits in the lean and fat lines, respectively. The dark blue bars represent the overlap of the traits between the two lines. (PDF 322 kb

Additional file 2: Table S1. of Identification of genome-wide SNP-SNP interactions associated with important traits in chicken

The 421 pairs of SNPs with significant interaction effects on testis weight (TeW). (XLSX 67 kb

Additional file 14: of Identification of putative regulatory regions and transcription factors associated with intramuscular fat content traits

Top ten transcription factor binding sites (TFBSs) over-represented in promoter sequence of genes that were associated with RUNX1T1. (XLSX 54 kb

Additional file 12: of Identification of putative regulatory regions and transcription factors associated with intramuscular fat content traits

Biological processes identified using the list of genes harbored within 2 Mb cis (A), trans (B) and hotspot (C) eQTL regions as the input gene list file. The values shown in the pie chart are the percentage of genes classified to each GO term over the total number of genes in the list used. (DOCX 599 kb

Additional file 10: of Identification of putative regulatory regions and transcription factors associated with intramuscular fat content traits

R-squared values of linkage disequilibrium between each pair of hotspot eQTLs. (XLSX 54 kb

Additional file 13: of Identification of putative regulatory regions and transcription factors associated with intramuscular fat content traits

Top ten transcription factor binding sites (TFBSs) over-represented in promoter sequence of genes that were associated with EGR4. (XLSX 49 kb

Additional file 6: of Identification of putative regulatory regions and transcription factors associated with intramuscular fat content traits

Variant effect annotation of trans-eQTLs by VEP tool. (XLSX 262 kb

Additional file 5: of Identification of putative regulatory regions and transcription factors associated with intramuscular fat content traits

Variant effect annotation of cis-eQTLs by VEP tool. (XLSX 212 kb

Additional file 16: of Identification of putative regulatory regions and transcription factors associated with intramuscular fat content traits

Over-represented TFBS motifs of: (A) EGR4 (NGFI-C aliases), (B) RUNX1 and (C) USF1 in genes into hotspot eQTL regions. (DOCX 240 kb