Detecting transcriptionally active regions using genomic tiling arrays

We have developed a method for interpreting genomic tiling array data, implemented as the program TranscriptionDetector. Probed loci expressed above background are identified by combining replicates in a way that makes minimal assumptions about the data. We performed medium-resolution Anopheles gambiae tiling array experiments and found extensive transcription of both coding and non-coding regions. Our method also showed improved detection of transcriptional units when applied to high-density tiling array data for ten human chromosomes

Serum HBsAg and HBcrAg is associated with inflammation in HBeAg-positive chronic hepatitis B patients

Backgrounds & aimsLiver inflammation is the main risk factor for developing liver fibrosis, cirrhosis, and even hepatocellular carcinoma in chronic hepatitis B (CHB) patients. To replace biopsy, additional non-invasive biomarkers to diagnose and grade liver necroinflammation are urgently required in clinical practice.MethodNinety-four CHB patients, including 74 HBeAg-positive and 20 HBeAg-negative patients, were enrolled and started entecavir or adefovir therapy. Serum HBV RNA, HBV DNA, HBsAg, hepatitis B core-related antigen (HBcrAg), ALT and AST levels, as well as intrahepatic HBV DNA and cccDNA were measured at baseline and during treatment. Liver inflammation was assessed at baseline and month 60 by liver biopsy. Inflammation regression was defined as a ≥1-grade decrease according to the Scheuer scoring system.ResultsIn HBeAg-positive CHB patients, at baseline, serum HBsAg and HBcrAg levels negatively correlated with inflammation grade, while ALT and AST levels positively correlated with inflammation grade. AST plus HBsAg exhibited excellent diagnostic ability for significant inflammation with an AUROC of 0.896. After 60 months of antiviral treatment, almost all the patients’ liver inflammation ameliorated to G1, and no patients had inflammation progression.ConclusionBesides ALT and AST, serum HBsAg and HBcrAg correlated with inflammation grade in HBeAg-positive CHB patients before NAs treatment. Moreover, the combination of HBsAg and AST exhibited excellent diagnostic ability for significant inflammation

Anticancer Activity of 2α, 3α, 19β, 23β-Tetrahydroxyurs-12-en-28-oic Acid (THA), a Novel Triterpenoid Isolated from Sinojackia sarcocarpa

BACKGROUND: Natural products represent an important source for agents of cancer prevention and cancer treatment. More than 60% of conventional anticancer drugs are derived from natural sources, particularly from plant-derived materials. In this study, 2α, 3α, 19β, 23β-tetrahydroxyurs-12-en-28-oic acid (THA), a novel triterpenoid from the leaves of Sinojackia sarcocarpa, was isolated, and its anticancer activity was investigated both in vitro and in vivo. PRINCIPAL FINDINGS: THA possessed potent tumor selected toxicity in vitro. It exhibited significantly higher cytotoxicity to the cancer cell lines A2780 and HepG2 than to IOSE144 and QSG7701, two noncancerous cell lines derived from ovary epithelium and liver, respectively. Moreover, THA showed a dose-dependent inhibitory effect on A2780 ovary tumor growth in vivo in nude mice. THA induced a dose-dependent apoptosis and G2/M cell cycle arrest in A2780 and HepG2 cells. The THA-induced cell cycle arrest was accompanied by a downregulation of Cdc2. The apoptosis induced by THA was evident by induction of DNA fragmentation, release of cytoplasmic Cytochrome c from mitochondria, activation of caspases, downregulation of Bcl-2 and upregulation of Bax. CONCLUSION: The primary data indicated that THA exhibit a high toxicity toward two cancer cells than their respective non-cancerous counterparts and has a significant anticancer activity both in vitro and in vivo. Thus, THA and/or its derivatives may have great potential in the prevention and treatment of human ovary tumors and other malignancies

Morphological diversity of single neurons in molecularly defined cell types.

Dendritic and axonal morphology reflects the input and output of neurons and is a defining feature of neuronal types1,2, yet our knowledge of its diversity remains limited. Here, to systematically examine complete single-neuron morphologies on a brain-wide scale, we established a pipeline encompassing sparse labelling, whole-brain imaging, reconstruction, registration and analysis. We fully reconstructed 1,741 neurons from cortex, claustrum, thalamus, striatum and other brain regions in mice. We identified 11 major projection neuron types with distinct morphological features and corresponding transcriptomic identities. Extensive projectional diversity was found within each of these major types, on the basis of which some types were clustered into more refined subtypes. This diversity follows a set of generalizable principles that govern long-range axonal projections at different levels, including molecular correspondence, divergent or convergent projection, axon termination pattern, regional specificity, topography, and individual cell variability. Although clear concordance with transcriptomic profiles is evident at the level of major projection type, fine-grained morphological diversity often does not readily correlate with transcriptomic subtypes derived from unsupervised clustering, highlighting the need for single-cell cross-modality studies. Overall, our study demonstrates the crucial need for quantitative description of complete single-cell anatomy in cell-type classification, as single-cell morphological diversity reveals a plethora of ways in which different cell types and their individual members may contribute to the configuration and function of their respective circuits

Review on the Photocatalyst Coatings of TiO2: Fabrication by Mechanical Coating Technique and Its Application

This review presents the latest results of studies directed at photocatalyst coatings of titanium dioxide (TiO2) prepared by mechanical coating technique (MCT) and its application. Compared with traditional coating techniques, MCT is a simple, low cost and useful coating formation process, which is proposed and developed based on mechanical frictional wear and impacts between substrate materials and metal powder particles in the bowl of planetary ball mill. The formation process of the metal coatings in MCT includes four stages: The nucleation by adhesion, the formation and coalescence of discrete islands, formation and thickening of continuous coatings, exfoliation of continuous coatings. Further, two-step MCT was developed based on the MCT concept for preparing composite coatings on alumina (Al2O3) balls. This review also discusses the influence on the fabrication of photocatalyst coatings after MCT and improvement of its photocatalytic activity: oxidation conditions, coating materials, melt salt treatment. In this review, the oxidation conditions had been studied on the oxidation temperature of 573 K, 673 K, 773 K, 873 K, 973 K, 1173 K and 1273 K, the oxidation time of 0.5 h, 1 h, 3 h, 10 h, 15 h, 20 h, 30 h, 40 h, and 50 h. The photocatalyst coatings showed the highest photocatalytic activity with the oxidation condition of 1073 K for 15 h. The metal powder of Ti, Ni and Cr had been used as the coating materials. The composite metal powder could affect the surface structure and photocatalytic activity. On the other hand, the melt salt treatment with KNO3 is an effective method to form the nano-size structure and enhance photocatalytic activity, especially under visible light

Fabrication of Photocatalyst Composite Coatings of Cr-TiO2 by Mechanical Coating Technique and Oxidation Process

The photocatalyst composite coatings on alumina (Al2O3) balls had been prepared by mechanical coating technique (MCT) with titanium (Ti) powder, adding a certain content of chromium (Cr) powder and a subsequent oxidation process. The effect of oxidation conditions and adding Cr on the composite coatings of chromium-titanium dioxide (Cr-TiO2) was investigated. The results show Cr-TiO2 coatings are with mixed-phase of anatase and rutile under different oxidation conditions, and the mass fraction of the rutile phase (XR) has been obviously increased when under 973 K. The SEM images indicate that adding Cr could significantly accelerate the growth of surface structures, especially at 1073 K. The photocatalytic activity of Cr-TiO2 coatings firstly increases, then decreases, with the addition of Cr. Compared with that of two other oxidation conditions, the enhancement on photocatalytic activity by adding Cr under visible light is relatively higher, especially at 973 K for 10 h

Laser Powder Bed Fusion of K418 Superalloy: Process, Microstructure, Texture Feature, and Mechanical Property

Laser Powder Bed Fusion (LPBF) is one of the most promising additive manufacturing (AM) technologies using metal powders. It has been increasingly applied in variety of industrial and engineering fields, including but not limited to aviation, aerospace, nuclear energy, automobiles, medical, molding, shipping, and so on. In this work, the influence of laser process parameters on the microstructure, textural features, and their resulting effect on the macroscopic mechanical properties of LPBF-manufactured K418 samples was investigated experimentally. OM, SEM, and X-ray diffraction were used to characterize the microstructure evolution, and EBSD was used to identify the crystal texture of the as-built K418 samples. The effect relationship between process, microstructure, and properties was investigated using mechanical property testing. Furthermore, the volumetric energy density VED was considered as a comprehensive evaluation index to reflect the effects of the main laser process parameters on the microstructure and mechanical behavior of LPBF-manufactured K418 samples, including scanning speed v, laser power P, layer thickness t, and hatch space H. The results show that as the volumetric energy density VED increases, the microstructure morphology of the LPBF-manufactured K418 sample evolves: clustered columnar grains → coarsened columnar grains → ultrafine columnar grains, and the mechanical properties of the LPBF-manufactured K418 sample improve, owing to the ultrafine elongated columnar grains and a strong {001} cubic texture