Biogeographic patterns and environmental drivers of species richness in the globally distributed Millettioid/Phaseoloid clade (Fabaceae, subfamily Papilionoideae)

IntroductionThe Millettioid/Phaseoloid (MP) clade of Fabaceae is globally distributed, economically important, and highly diverse, making it an attractive system for studying biogeographic and macroecological patterns at a global scale. We conducted the first global macroecological study to map and explore the environmental drivers of the MP clade's species richness patterns.MethodsWe compiled 116,212 species occurrences (161 genera) for the MP clade and 20 environmental variables (19 bioclimatic variables and elevation). Geospatial analyses were performed to estimate species richness patterns and biogeographic heterogeneity. The effects of environmental variables on the species richness of the MP clade were measured through multiple regression models.ResultsOur study identified the megathermal regions as hotspots of species richness for the MP clade. While species distributions and richness largely fit the latitudinal diversity gradient pattern, there was a significant negative relationship between the species richness of the MP clade along the latitude and longitude. The Afrotropic biogeographic realm had the highest alpha diversity (~36%); in terms of biome types, tropical and subtropical moist broadleaf forests had the highest alpha diversity (25%), while the beta diversity revealed a high dispersal rate and habitat tracking. Furthermore, the species richness was positively influenced by multiple climatic factors, with the mean diurnal range of temperatures and precipitation in the warmest quarter having strongest influence.DiscussionOverall, the staggering species richness patterns could be explained by multiple diversity gradient hypotheses. Particularly, colder climates play a crucial role in shaping the species richness pattern by limiting the ecological opportunities for MP clade species in the higher latitudes of the Northern Hemisphere. This suggests that the species richness patterns of the MP clade can be described as "when dispersal meets adaptation." Our study provides a new basis for identifying priority regions for conservation of legumes

Population structure and evolutionary history of the greater cane rat (Thryonomys swinderianus) from the Guinean Forests of West Africa

Grasscutter (Thryonomys swinderianus) is a large-body old world rodent found in sub-Saharan Africa. The body size and the unique taste of the meat of this major crop pest have made it a target of intense hunting and a potential consideration as a micro-livestock. However, there is insufficient knowledge on the genetic diversity of its populations across African Guinean forests. Herein, we investigated the genetic diversity, population structures and evolutionary history of seven Nigerian wild grasscutter populations together with individuals from Cameroon, Republic of Benin, and Ghana, using five mitochondrial fragments, including D-loop and cytochrome b (CYTB). D-loop haplotype diversity ranged from 0.571 (± 0.149) in Republic of Benin to 0.921 (± 0.013) in Ghana. Within Nigeria, the haplotype diversity ranged from 0.659 (± 0.059) in Cross River to 0.837 (± 0.075) in Ondo subpopulation. The fixation index (FST), haplotype frequency distribution and analysis of molecular variance revealed varying levels of population structures across populations. No significant signature of population contraction was detected in the grasscutter populations. Evolutionary analyses of CYTB suggests that South African population might have diverged from other populations about 6.1 (2.6–10.18, 95% CI) MYA. Taken together, this study reveals the population status and evolutionary history of grasscutter populations in the region

Polymorphism of prion protein gene (PRNP) in Nigerian sheep

ABSTRACTPolymorphism of the prion protein gene (PRNP) gene determines an animal’s susceptibility to scrapie. Three polymorphisms at codons 136, 154, and 171 have been linked to classical scrapie susceptibility, although many variants of PRNP have been reported. However, no study has investigated scrapie susceptibility in Nigerian sheep from the drier agro-climate zones. In this study, we aimed to identify PRNP polymorphism in nucleotide sequences of 126 Nigerian sheep by comparing them with public available studies on scrapie-affected sheep. Further, we deployed Polyphen-2, PROVEAN, and AMYCO analyses to determine the structure changes produced by the non-synonymous SNPs. Nineteen (19) SNPs were found in Nigerian sheep with 14 being non-synonymous. Interestingly, one novel SNP (T718C) was identified. There was a significant difference (P < 0.05) in the allele frequencies of PRNP codon 154 between sheep in Italy and Nigeria. Based on the prediction by Polyphen-2, R154H was probably damaging while H171Q was benign. Contrarily, all SNPs were neutral via PROVEAN analysis while two haplotypes (HYKK and HDKK) had similar amyloid propensity of PRNP with resistance haplotype in Nigerian sheep. Our study provides valuable information that could be possibly adopted in programs targeted at breeding for scrapie resistance in sheep from tropical regions