Estimation of Resilience Parameters Following LPS Injection Based on Activity Measured With Computer Vision

Resilience could be referred to as the animal’s ability to successfully adapt to a challenge. This is typically displayed by a quick return to initial metabolic or activity levels and behaviors. Pigs have distinct diurnal activity patterns. Deviations from these patterns could potentially be utilized to quantify resilience. However, human observations of activity are labor intensive and not feasible in practice on a large scale. In this study, we show the use of a computer vision tracking algorithm to quantify resilience based on activity individual patterns following a lipopolysaccharide (LPS) challenge, which induced a sickness response. We followed 121 individual pigs housed in barren or enriched housing systems, as previous work suggests an impact of housing on resilience, for eight days. The enriched housing consisted of delayed weaning in a group farrowing system and extra space compared with the barren pens and environmental enrichment. Enriched housed pigs were more active pre-injection of LPS, especially during peak activity times, than barren housed pigs (49.4 ± 9.9 vs. 39.1 ± 5.0 meter/hour). Four pigs per pen received an LPS injection and two pigs a saline injection. LPS injected animals were more likely to show a dip in activity than controls (86% vs 17%). Duration and Area Under the Curve (AUC) of the dip were not affected by housing. However, pigs with the same AUC could have a long and shallow dip or a steep and short dip. Therefore the AUC:duration ratio was calculated, and enriched housed pigs had a higher AUC:duration ratio compared to barren housed pigs (9244.1 ± 5429.8 vs 5919.6 ± 4566.1). Enriched housed pigs might therefore have a different strategy to cope with an LPS sickness challenge. However, more research on this strategy and the use of activity to quantify resilience and its relationship to physiological parameters is therefore needed

Individual detection and tracking of group housed pigs in their home pen using computer vision

Modern welfare definitions not only require that the Five Freedoms are met, but animals should also be able to adapt to changes (i. e., resilience) and reach a state that the animals experience as positive. Measuring resilience is challenging since relatively subtle changes in animal behavior need to be observed 24/7. Changes in individual activity showed potential in previous studies to reflect resilience. A computer vision (CV) based tracking algorithm for pigs could potentially measure individual activity, which will be more objective and less time consuming than human observations. The aim of this study was to investigate the potential of state-of-the-art CV algorithms for pig detection and tracking for individual activity monitoring in pigs. This study used a tracking-by-detection method, where pigs were first detected using You Only Look Once v3 (YOLOv3) and in the next step detections were connected using the Simple Online Real-time Tracking (SORT) algorithm. Two videos, of 7 h each, recorded in barren and enriched environments were used to test the tracking. Three detection models were proposed using different annotation datasets: a young model where annotated pigs were younger than in the test video, an older model where annotated pigs were older than the test video, and a combined model where annotations from younger and older pigs were combined. The combined detection model performed best with a mean average precision (mAP) of over 99.9% in the enriched environment and 99.7% in the barren environment. Intersection over Union (IOU) exceeded 85% in both environments, indicating a good accuracy of the detection algorithm. The tracking algorithm performed better in the enriched environment compared to the barren environment. When false positive tracks where removed (i.e., tracks not associated with a pig), individual pigs were tracked on average for 22.3 min in the barren environment and 57.8 min in the enriched environment. Thus, based on proposed tracking-by-detection algorithm, pigs can be tracked automatically in different environments, but manual corrections may be needed to keep track of the individual throughout the video and estimate activity. The individual activity measured with proposed algorithm could be used as an estimate to measure resilience

Review of Sensor Technologies in Animal Breeding: Phenotyping Behaviors of Laying Hens to Select Against Feather Pecking

Damaging behaviors, like feather pecking (FP), have large economic and welfare consequences in the commercial laying hen industry. Selective breeding can be used to obtain animals that are less likely to perform damaging behavior on their pen-mates. However, with the growing tendency to keep birds in large groups, identifying specific birds that are performing or receiving FP is difficult. With current developments in sensor technologies, it may now be possible to identify laying hens in large groups that show less FP behavior and select them for breeding. We propose using a combination of sensor technology and genomic methods to identify feather peckers and victims in groups. In this review, we will describe the use of "-omics" approaches to understand FP and give an overview of sensor technologies that can be used for animal monitoring, such as ultra-wideband, radio frequency identification, and computer vision. We will then discuss the identification of indicator traits from both sensor technologies and genomics approaches that can be used to select animals for breeding against damaging behavior.status: publishe