4 research outputs found
Closeness of match to the Su(Hw) binding site consensus is associated with binding
The Patser value for each Patser match is plotted against the enrichment (arsinh transformation; approximately equal to logratio) of the fragment containing the matching sequence. The enrichment value is the highest mean value from the three chromatin sources. The vertical line indicates the Patser = e; for matches with < e, 63% show enrichment greater than 0.5 (1.4-fold) and 53% show enrichment greater than 0.8 (1.7-fold). Su(Hw), Suppressor of Hairy-wing.<p><b>Copyright information:</b></p><p>Taken from "Genomic mapping of Suppressor of Hairy-wing binding sites in "</p><p>http://genomebiology.com/2007/8/8/R167</p><p>Genome Biology 2007;8(8):R167-R167.</p><p>Published online 16 Aug 2007</p><p>PMCID:PMC2374998.</p><p></p
Correlation of ChIP enrichment using either anti-Su(Hw) on wild-type chromatin or anti-GFP on chromatin from Su(Hw)-GFP transgenic
The enrichment values are plotted as the arsinh transformation (approximately equivalent to the log2 scale) of the ratio of specific versus control ChIP. Correlation coefficient is 0.66. ChIP, chromatin immunoprecipitation; GFP, green fluorescent protein; Su(Hw), Suppressor of Hairy-wing.<p><b>Copyright information:</b></p><p>Taken from "Genomic mapping of Suppressor of Hairy-wing binding sites in "</p><p>http://genomebiology.com/2007/8/8/R167</p><p>Genome Biology 2007;8(8):R167-R167.</p><p>Published online 16 Aug 2007</p><p>PMCID:PMC2374998.</p><p></p
Genes with expression changes in su(Hw) mutant larvae (L3) and wing discs
A cluster diagram showing changes in gene expression in a () null condition compared with changes in the heterozygous controls (fold change ≥ 1.7, ≤ 10for the mutants and approximately half the fold change at ≤ 10for the heterozygotes). The table lists those genes with greater than 1.7-fold expression change that have predicted Suppressor of Hairy-wing (Su [Hw]) binding sites within 30 kilobases (kb). The Expression column shows the absolute fold change for each gene. The Distance column indicates the distance between the gene model and Su(Hw) sites(s); for those genes with predicted sites within the gene model, the number of sites are indicated. If there is more than one site, the distance between them is given. The Location column indicates where the predicted sites lie with respect to the gene models. UTR, untranslated region.<p><b>Copyright information:</b></p><p>Taken from "Genomic mapping of Suppressor of Hairy-wing binding sites in "</p><p>http://genomebiology.com/2007/8/8/R167</p><p>Genome Biology 2007;8(8):R167-R167.</p><p>Published online 16 Aug 2007</p><p>PMCID:PMC2374998.</p><p></p
Expression changes in the 3 Mb region with respect to Su(Hw) binding sites
Expression changes (as absolute fold change according to the scale bar) are indicated by the bars above the gene models, with upregulated genes in orange and downregulated genes in blue. The bars mark the 5' end of each gene. The location of Su(Hw) binding sites are plotted on the three rows All sites, Cluster 1, and Cluster 2. Cluster 2 indicates the two sites within 100 base pairs of each other. Cluster 1 indicates the six pairs of sites within 1 kilobase of each other. All sites plots the locations of the remaining 83 sites in the region. The maps are plotted and rendered using the Affymetrix Integrated Genome Browser.<p><b>Copyright information:</b></p><p>Taken from "Genomic mapping of Suppressor of Hairy-wing binding sites in "</p><p>http://genomebiology.com/2007/8/8/R167</p><p>Genome Biology 2007;8(8):R167-R167.</p><p>Published online 16 Aug 2007</p><p>PMCID:PMC2374998.</p><p></p