3,132 research outputs found
Integrin activation - the importance of a positive feedback
Integrins mediate cell adhesion and are essential receptors for the
development and functioning of multicellular organisms. Integrin activation is
known to require both ligand and talin binding and to correlate with cluster
formation but the activation mechanism and precise roles of these processes are
not yet resolved. Here mathematical modeling, with known experimental
parameters, is used to show that the binding of a stabilizing factor, such as
talin, is alone insufficient to enable ligand-dependent integrin activation for
all observed conditions; an additional positive feedback is required.Comment: in press in Bulletin of Mathematical Biolog
History effects and pinning regimes in solid vortex matter
We propose a phenomenological model that accounts for the history effects
observed in ac susceptibility measurements in YBa2Cu3O7 single crystals [Phys.
Rev. Lett. 84, 4200 (2000) and Phys. Rev. Lett. 86, 504 (2001)]. Central to the
model is the assumption that the penetrating ac magnetic field modifies the
vortex lattice mobility, trapping different robust dynamical states in
different regions of the sample. We discuss in detail on the response of the
superconductor to an ac magnetic field when the vortex lattice mobility is not
uniform inside the sample. We begin with an analytical description for a simple
geometry (slab) and then we perform numerical calculations for a strip in a
transverse magnetic field which include relaxation effects. In calculations,
the vortex system is assumed to coexist in different pinning regimes. The
vortex behavior in the regions where the induced current density j has been
always below a given threshold (j_c^>) is described by an elastic Campbell-like
regime (or a critical state regime with local high critical current density,
j_c^>). When the VS is shaken by symmetrical (e.g. sinusoidal) ac fields, the
critical current density is modified to j_c^) at
regions where vortices have been forced to oscillate by a current density
larger than j_c^>. Experimentally, an initial state with high critical current
density (j_c^>) can be obtained by zero field cooling, field cooling (with no
applied ac field) or by shaking the vortex lattice with an asymmetrical (e.g.
sawtooth) field. We compare our calculations with experimental ac
susceptibility results in YBa2Cu3O7 single crystals.Comment: 11 pages, 7 figures. To be published in PR
DNA deaminases induce break-associated mutation showers with implication of APOBEC3B and 3A in breast cancer kataegis.
Breast cancer genomes have revealed a novel form of mutation showers (kataegis) in which multiple same-strand substitutions at C:G pairs spaced one to several hundred nucleotides apart are clustered over kilobase-sized regions, often associated with sites of DNA rearrangement. We show kataegis can result from AID/APOBEC-catalysed cytidine deamination in the vicinity of DNA breaks, likely through action on single-stranded DNA exposed during resection. Cancer-like kataegis can be recapitulated by expression of AID/APOBEC family deaminases in yeast where it largely depends on uracil excision, which generates an abasic site for strand breakage. Localized kataegis can also be nucleated by an I-SceI-induced break. Genome-wide patterns of APOBEC3-catalyzed deamination in yeast reveal APOBEC3B and 3A as the deaminases whose mutational signatures are most similar to those of breast cancer kataegic mutations. Together with expression and functional assays, the results implicate APOBEC3B/A in breast cancer hypermutation and give insight into the mechanism of kataegis. DOI:http://dx.doi.org/10.7554/eLife.00534.001
Glass Transition in the Polaron Dynamics of CMR Manganites
Neutron scattering measurements on a bilayer manganite near optimal doping
show that the short-range polarons correlations are completely dynamic at high
T, but then freeze upon cooling to a temperature T* 310 K. This glass
transition suggests that the paramagnetic/insulating state arises from an
inherent orbital frustration that inhibits the formation of a long range
orbital- and charge-ordered state. Upon further cooling into the
ferromagnetic-metallic state (Tc=114 K), where the polarons melt, the diffuse
scattering quickly develops into a propagating, transverse optic phonon.Comment: 4 pages, 4 figures. Physical Review Letters (in Press
“I h 8 u”: Findings from a five-year study of text and e-mail bullying
Copyright @ 2010 British Educational Research Association. The final version of this article is available at the link below.This study charts reports of nasty or threatening text and e-mail messages received by students in academic years 7 and 8 (11-13 years of age) attending 13 secondary schools in the North of England between 2002-2006. Annual surveys were undertaken on behalf of the local education authority (LEA) to monitor bullying. Results indicated that, over five years, the number of pupils receiving one or more nasty or threatening text messages or e-mails increased significantly, particularly among girls. However, receipt of frequent nasty or threatening text and e-mail messages remained relatively stable. For boys, being a victim of direct-physical bullying was associated with receiving nasty or threatening text and e-mail messages; for girls it was being unpopular among peers. Boys received more hate-related messages and girls were primarily the victims of name-calling, Findings are discussed with respect to theoretical and policy developments, and recommendations for future research are offered
The Structure of Nanoscale Polaron Correlations in La1.2Sr1.8Mn2O7
A system of strongly-interacting electron-lattice polarons can exhibit charge
and orbital order at sufficiently high polaron concentrations. In this study,
the structure of short-range polaron correlations in the layered colossal
magnetoresistive perovskite manganite, La1.2Sr1.8Mn2O7, has been determined by
a crystallographic analysis of broad satellite maxima observed in diffuse X-ray
and neutron scattering data. The resulting q=(0.3,0,1) modulation is a
longitudinal octahedral-stretch mode, consistent with an incommensurate
Jahn-Teller-coupled charge-density-wave fluctuations, that implies an unusual
orbital-stripe pattern parallel to the directions.Comment: Reformatted with RevTe
Peak effect, vortex-lattice melting-line and order - disorder transition in conventional and high-T superconductors
We investigate the order - disorder transition line from a Bragg glass to an
amorphous vortex glass in the H-T phase diagram of three-dimensional type-II
superconductors with account of both pinning-caused and thermal fluctuations of
the vortex lattice. Our approach is based on the Lindemann criterion and on
results of the collective pinning theory and generalizes previous work of other
authors. It is shown that the shapes of the order - disorder transition line
and the vortex lattice melting curve are determined only by the Ginzburg
number, which characterizes thermal fluctuations, and by a parameter which
describes the strength of the quenched disorder in the flux-line lattice. In
the framework of this unified approach we obtain the H-T phase diagrams for
both conventional and high-Tc superconductors. Several well-known experimental
results concerning the fishtail effect and the phase diagram of high-Tc
superconductors are naturally explained by assuming that a peak effect in the
critical current density versus H signalizes the order - disorder transition
line in superconductors with point defects.Comment: 15 pages including 11 figure
Measurement of inclusive D*+- and associated dijet cross sections in photoproduction at HERA
Inclusive photoproduction of D*+- mesons has been measured for photon-proton
centre-of-mass energies in the range 130 < W < 280 GeV and a photon virtuality
Q^2 < 1 GeV^2. The data sample used corresponds to an integrated luminosity of
37 pb^-1. Total and differential cross sections as functions of the D*
transverse momentum and pseudorapidity are presented in restricted kinematical
regions and the data are compared with next-to-leading order (NLO) perturbative
QCD calculations using the "massive charm" and "massless charm" schemes. The
measured cross sections are generally above the NLO calculations, in particular
in the forward (proton) direction. The large data sample also allows the study
of dijet production associated with charm. A significant resolved as well as a
direct photon component contribute to the cross section. Leading order QCD
Monte Carlo calculations indicate that the resolved contribution arises from a
significant charm component in the photon. A massive charm NLO parton level
calculation yields lower cross sections compared to the measured results in a
kinematic region where the resolved photon contribution is significant.Comment: 32 pages including 6 figure
Measurement of the diffractive structure function in deep inelastic scattering at HERA
This paper presents an analysis of the inclusive properties of diffractive
deep inelastic scattering events produced in interactions at HERA. The
events are characterised by a rapidity gap between the outgoing proton system
and the remaining hadronic system. Inclusive distributions are presented and
compared with Monte Carlo models for diffractive processes. The data are
consistent with models where the pomeron structure function has a hard and a
soft contribution. The diffractive structure function is measured as a function
of \xpom, the momentum fraction lost by the proton, of , the momentum
fraction of the struck quark with respect to \xpom, and of . The \xpom
dependence is consistent with the form \xpoma where
in all bins of and
. In the measured range, the diffractive structure function
approximately scales with at fixed . In an Ingelman-Schlein type
model, where commonly used pomeron flux factor normalisations are assumed, it
is found that the quarks within the pomeron do not saturate the momentum sum
rule.Comment: 36 pages, latex, 11 figures appended as uuencoded fil
Measurement of Jet Shapes in Photoproduction at HERA
The shape of jets produced in quasi-real photon-proton collisions at
centre-of-mass energies in the range GeV has been measured using the
hadronic energy flow. The measurement was done with the ZEUS detector at HERA.
Jets are identified using a cone algorithm in the plane with a
cone radius of one unit. Measured jet shapes both in inclusive jet and dijet
production with transverse energies GeV are presented. The jet
shape broadens as the jet pseudorapidity () increases and narrows
as increases. In dijet photoproduction, the jet shapes have been
measured separately for samples dominated by resolved and by direct processes.
Leading-logarithm parton-shower Monte Carlo calculations of resolved and direct
processes describe well the measured jet shapes except for the inclusive
production of jets with high and low . The observed
broadening of the jet shape as increases is consistent with the
predicted increase in the fraction of final state gluon jets.Comment: 29 pages including 9 figure
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