A new and versatile method for the successful conversion of AFLP-TM markers into simple single locus markers

Genetic markers can efficiently be obtained by using amplified fragment length polymorphism (AFLP) fingerprinting because no prior information on DNA sequence is required. However, the conversion of AFLP markers from complex fingerprints into simple single locus assays is perceived as problematic because DNA sequence information is required for the design of new locus-specific PCR primers. In addition, single locus polymorphism (SNP) information is required to design an allele-specific assay. This paper describes a new and versatile method for the conversion of AFLP markers into simple assays. The protocol presented in this paper offers solutions for frequently occurring pitfalls and describes a procedure for the identification of the SNP responsible for the AFLP. By following this approach, a high success rate for the conversion of AFLP markers into locus-specific markers was obtained

Refined localization of TSC1 by combined analysis of 9q34 and 16pl3 data in 14 tuberous sclerosis families

Tuberous sclerosis (TSC) is a heterogeneous trait. Since 1990, linkage studies have yielded putative TSC loci on chromosomes 9, 11, 12 and 16. Our current analysis, performed on 14 Dutch and British families, reveals only evidence for loci on chromosome 9q34 (TSC1) and chromosome 16p13 (TSC2). We have found no indication for a third locus for TSC, linked or unlinked to either of these chromosomal regions. The majority of our families shows linkage to chromosome 9. We have refined the candidate region for TSC1 to a region of approximately 5 c M between ABL and ABO

The development of lettuce backcross inbred lines (BILs) for exploitation of the Lactuca saligna (wild lettuce) germplasm

Backcross inbred lines (BILs) were developed in which chromosome segments of Lactuca saligna (wild lettuce) were introgressed into L. sativa (lettuce). These lines were developed by four to five backcrosses and one generation of selfing. The first three generations of backcrossing were random. Marker-assisted selection began in the BC4 generation and continued until the final set of BILs was reached. A set of 28 lines was selected that together contained 96% of the L. saligna genome. Of these lines, 20 had a single homozygous introgression (BILs), four had two homozygous introgressions (doubleBILs) and four lines had a heterozygous single introgression (preBILs). Segregation ratios in backcross generations were compared to distorted segregation ratios in an F-2 population, and the results indicated that most of the distorted segregations can be explained by genetic effects on pollen- or egg-cell fitness. By means of BIL association mapping we were able to map 12 morphological traits and hundreds of additional amplified fragment length polymorphic (AFLP) markers. The total AFLP map now comprises 757 markers. This set of BILs is very useful for future genetic studies

Genetic control of resistance to soft rot caused by Erwinia carotovora subsp carotovora in Zantedeschia spp. (Araceae), section Aestivae

The pattern of heredity of resistance to Erwinia carotovora subsp. carotovora in Zantedeschia spp. is investigated. Four species with different resistance levels (Z. albomaculata, Z. elliotiana, Z. pentlandii, Z. rehmannii) were compared to their reciprocal offspring. The occurrence of plastome-genome incompatibility (PGI) affected plant resistance in all families. Therefore, plants that suffered from PGI were omitted from genetic analyses. Resistance was quantitative and the correlation between resistance levels of parents and offspring (h(2) = 0.33; r(2) = 0.66) indicated a genetic basis of resistance. Z. rehmannii and Z. albomaculata contributed more resistance genes than Z. elliotiana or Z. pentlandii. Transgression among some of the offspring of Z. rehmannii and Z. albomaculata indicated the presence of complementary resistance genes in these two species and good potential for resistance breeding

Genetic control of resistance to soft rot caused by Erwinia carotovora subsp carotovora in Zantedeschia spp. (Araceae), section Aestivae

The pattern of heredity of resistance to Erwinia carotovora subsp. carotovora in Zantedeschia spp. is investigated. Four species with different resistance levels (Z. albomaculata, Z. elliotiana, Z. pentlandii, Z. rehmannii) were compared to their reciprocal offspring. The occurrence of plastome-genome incompatibility (PGI) affected plant resistance in all families. Therefore, plants that suffered from PGI were omitted from genetic analyses. Resistance was quantitative and the correlation between resistance levels of parents and offspring (h(2) = 0.33; r(2) = 0.66) indicated a genetic basis of resistance. Z. rehmannii and Z. albomaculata contributed more resistance genes than Z. elliotiana or Z. pentlandii. Transgression among some of the offspring of Z. rehmannii and Z. albomaculata indicated the presence of complementary resistance genes in these two species and good potential for resistance breeding