8 research outputs found
The complete mitochondrial genome of Slaty-backed Forktail, <i>Enicurus schistaceus</i> (Passeriformes: Muscicapidae) and phylogenetic analysis
The complete mitogenome of the Slaty-backed Forktail (Enicurus schistaceus) was first sequenced using next-generation sequencing. It was 17,112 bp long, with a base composition of 14.17% G, 31.77% C, 30.73% A, and 23.33% T and an AT content of 54.06%. Similar to other mitochondrial genomes within the Muscicapidae family, E. schistaceus exhibited a relatively consistent mitogenome arrangement; it consisted of 22 tRNA genes, two rRNA genes, 13 protein-coding genes, and one control region. Notably, ND6 and eight tRNA genes were encoded on the light strand. Phylogenetic analysis of the 12 Muscicapidae mitogenomes substantiated the monophyly of all genera, including E. schistaceus. Furthermore, the analysis demonstrated a close relationship between Enicurus and Myophonus.</p
Additional file 6: of Multiple independent structural dynamic events in the evolution of snake mitochondrial genomes
Table S3. Primers sequences used in this study. (DOC 66 kb
Additional file 5: of Multiple independent structural dynamic events in the evolution of snake mitochondrial genomes
Table S2. List of taxa used in this study. *: the species were used in Yan et al. [18]. #: the species were used in Chen and Zhao. [19]. (DOC 132 kb
Additional file 2: of Multiple independent structural dynamic events in the evolution of snake mitochondrial genomes
Table S1. Features of the mitogenomes of three Lycodon species. (DOCX 22 kb
Additional file 7: of Multiple independent structural dynamic events in the evolution of snake mitochondrial genomes
Table S4. Best-fit models and partitioning schemes selected by PartitionFinder for the dataset analyzed. (DOCX 22 kb
Additional file 1: of Multiple independent structural dynamic events in the evolution of snake mitochondrial genomes
Figure S1. Gene organization of control regions and WANCY cluster in snake mitochondrial genomes. Circular mitogenomes are linearly depicted as an open bar divided into individual genes. Only relevant genes are shown, and in a way that does not reflect actual gene lengths. B, C, D, E came from Kumazawa et al. [16]; A, F from Yan et al. [18]; G from Chen and Zhao [19]. The H- and L- strand encoded genes are denoted above and below each gene box. Transfer RNAs are indicated by their single-letter abbreviations. Abbreviations: 12S, 16S, and P* stand for 12S rRNA, 16S rRNA, and a pseudogene for tRNAPro gene, respectively. Taxa for which have been reported to date are listed in Additional file 5: Table S2. (PDF 612 kb
Additional file 4: of Multiple independent structural dynamic events in the evolution of snake mitochondrial genomes
Figure S3. Homology analysis of OL. The sequences of OL of Alethinophidians and four saurians are aligned. (PDF 574 kb
Additional file 3: of Multiple independent structural dynamic events in the evolution of snake mitochondrial genomes
Figure S2. Bayesian phylogenetic inference tree based on the combined data set of RNA genes and Protein-coding genes. The numbers above the branches indicate the posterior probability. (PDF 256 kb