103 research outputs found

    Integrating the Genetic and Physical Maps of Arabidopsis thaliana: Identification of Mapped Alleles of Cloned Essential (EMB) Genes

    Get PDF
    The classical genetic map of Arabidopsis includes more than 130 genes with an embryo-defective (emb) mutant phenotype. Many of these essential genes remain to be cloned. Hundreds of additional EMB genes have been cloned and catalogued (www.seedgenes.org) but not mapped. To facilitate EMB gene identification and assess the current level of saturation, we updated the classical map, compared the physical and genetic locations of mapped loci, and performed allelism tests between mapped (but not cloned) and cloned (but not mapped) emb mutants with similar chromosome locations. Two hundred pairwise combinations of genes located on chromosomes 1 and 5 were tested and more than 1100 total crosses were screened. Sixteen of 51 mapped emb mutants examined were found to be disrupted in a known EMB gene. Alleles of a wide range of published EMB genes (YDA, GLA1, TIL1, AtASP38, AtDEK1, EMB506, DG1, OEP80) were discovered. Two EMS mutants isolated 30 years ago, T-DNA mutants with complex insertion sites, and a mutant with an atypical, embryo-specific phenotype were resolved. The frequency of allelism encountered was consistent with past estimates of 500 to 1000 EMB loci. New EMB genes identified among mapped T-DNA insertion mutants included CHC1, which is required for chromatin remodeling, and SHS1/AtBT1, which encodes a plastidial nucleotide transporter similar to the maize Brittle1 protein required for normal endosperm development. Two classical genetic markers (PY, ALB1) were identified based on similar map locations of known genes required for thiamine (THIC) and chlorophyll (PDE166) biosynthesis. The alignment of genetic and physical maps presented here should facilitate the continued analysis of essential genes in Arabidopsis and further characterization of a broad spectrum of mutant phenotypes in a model plant

    Gap formation and dynamics after long-term steady state in an old-growth Picea abies stand in Norway: Above- and belowground interactions

    Get PDF
    Stand dynamics and the gap initiation prior to gap formation are not well- understood because of its long- term nature and the scarcity of late- successional stands. Reconstruction of such disturbance is normally based on historical records and den-droecological methods. We investigated gap initiation and formation at the fine- scale stand level in the old- growth reserve of Karlshaugen in Norway. Given its long- term conservation history, and thorough mapping in permanent marked plots with spatially referenced trees, it provides an opportunity to present stand development before, during, and after gap formation. Late- successional decline in biomass was recorded after more than 50 years of close to steady state. Gaps in the canopy were mainly cre-ated by large old trees that had been killed by spruce bark beetles. Snapping by wind was the main reason for treefall. Long- term dominance of Norway spruce excluded downy birch and Scots pine from the stand. Comparisons of the forest floor soil prop-erties between the gap and nongap area showed significantly higher concentrations of plant available Ca within the gap area. Plant root simulator (PRSâ„¢) probes showed significantly higher supply rates for Ca and Mg, but significantly lower K for the gap compared to the nongap area. Soil water from the gap area had significantly higher C:N ratios compared to the nongap area. Fine- scale variation with increasing distance to logs indicated that CWD is important for leaking of DOC and Ca. Our long- term study from Karlshaugen documents gap dynamics after more than 50 years of steady state and a multiscale disturbance regime in an old- growth forest. The observed dis-turbance dynamic caused higher aboveground and belowground heterogeneity in plots, coarse woody debris, and nutrients. Our study of the nutrient levels of the forest floor suggest that natural gaps of old- growth forest provide a long- lasting biogeo-chemical feedback system particularly with respect to Ca and probably also N. Norway spruce trees near the gap edge responded with high plasticity to reduced competition, showing the importance of the edge zone as hot spots for establishing heterogeneity, but also the potential for carbon sequestration in old- growth forest.Gap formation and dynamics after long-term steady state in an old-growth Picea abies stand in Norway: Above- and belowground interactionspublishedVersio

    Twenty of the most thermophilous vascular plant species in Svalbard and their conservation state

    No full text
    An aim for conservation in Norway is preserving the Svalbard archipelago as one of the least disturbed areas in the Arctic. Information on local distribution, population sizes and ecology is summarized for 20 thermophilous vascular plant species. The need for conservation of northern, marginal populations in Svalbard is reviewed, using World Conservation Union categories and criteria at a regional scale. Thirteen species reach their northernmost distribution in Svalbard, the remaining seven in the western Arctic. Nine species have 1-8 populations in Svalbard and are assigned to Red List categories endangered or critically endangered: Campanula rotundifolia, Euphrasia frigida, Juncus castaneus, Kobresia simpliciuscula, Rubus chamaemorus, Alchemilla glomerulans, Ranunculus wilanderi, Salix lanata and Vaccinium uliginosum, the last four species needing immediate protective measures. Five species are classified as vulnerable: Betula nana, Carex marina ssp. pseudolagopina, Luzula wahlenbergii, Ranunculus arcticus and Ranunculus pallasii. Six species are considered at lower risk: Calamagrostis stricta, Empetrum nigrum ssp. hermaphroditum, Hippuris vulgaris (only occurring on Bjørnøya), Juncus triglumis, Ranunculus lapponicus and Rhodiola rosea. The warmer Inner Arctic Fjord Zone of Spitsbergen supports most of the 20 target species and is of particular importance for conservation. Endangered or vulnerable species were found in a variety of edaphic conditions; thus, several kinds of habitats need protection
    • …
    corecore