The Heterogeneity in the Landscape of Gene Dominance in Maize is Accompanied by Unique Chromatin Environments

Subgenome dominance after whole-genome duplication (WGD) has been observed in many plant species. However, the degree to which the chromatin environment affects this bias has not been explored. Here, we compared the dominant subgenome (maize1) and the recessive subgenome (maize2) with respect to patterns of sequence substitutions, genes expression, transposable element accumulation, small interfering RNAs, DNA methylation, histone modifications, and accessible chromatin regions (ACRs). Our data show that the degree of bias between subgenomes for all the measured variables does not vary significantly when both of the WGD genes are located in pericentromeric regions. Our data further indicate that the location of maize1 genes in chromosomal arms is pivotal for maize1 to maintain its dominance, but location has a less effect on maize2 homoeologs. In addition to homoeologous genes, we compared ACRs, which often harbor cis-regulatory elements, between the two subgenomes and demonstrate that maize1 ACRs have a higher level of chromatin accessibility, a lower level of sequence substitution, and are enriched in chromosomal arms. Furthermore, we find that a loss of maize1 ACRs near their nearby genes is associated with a reduction in purifying selection and expression of maize1 genes relative to their maize2 homoeologs. Taken together, our data suggest that chromatin environment and cis-regulatory elements are important determinants shaping the divergence and evolution of duplicated genes

Mission Overview and Initial Observation Results of the X-Ray Pulsar Navigation-I Satellite

The newly launched X-ray pulsar navigation-I (XPNAV-1) is an experimental satellite of China that is designed for X-ray pulsar observation. This paper presents the initial observation results and aims to recover the Crab pulsar’s pulse profile to verify the X-ray instrument’s capability of observing pulsars in space. With the grazing-incidence focusing type instrument working at the soft X-ray band (0.5–10 keV), up to 162 segments of observations of the Crab pulsar are fulfilled, and more than 5 million X-ray events are recorded. Arrival times of photons are corrected to the solar system barycentre, and the 33 ms pulse period is sought out for Crab. Epoch folding of all the corrected photon times generates the refined pulse profile of Crab. The characteristic two-peak profile proves that the Crab pulsar has been clearly seen, so that the conclusion is made that XPNAV-1’s goal of being capable of observing pulsars is achieved

Effect of Water Saturation on Gas-Accessible Effective Pore Space in Gas Shales

AbstractThe existence and content of water will certainly affect the effective pore space of shales and therefore is a key point for the evaluation of in-situ gas content and gas flow capacity of shale reservoirs. In order to reasonably evaluate the gas storage and flow capacities of water-bearing shale reservoirs, the effect of water on the effective pore space of shales needs to be understood. In this study, the Upper Permian Longtan shale in the southeastern Sichuan Basin, China, was selected as an example to conduct nuclear magnetic resonance cryoporometry (NMRC) measurements under different water saturation levels. The gas-accessible effective pore spaces in shales under different water saturation levels were quantified, and the effect of water saturation on gas-accessible effective pore space in shales was investigated. The results show that water plays an important role in the gas-accessible effective pore space of shales. When the Longtan shale increases from a dry state to a water saturation of 65%, 75%, and 90%, the gas-accessible effective pore volume decreases by 35%-60% (average 46.3%), 50%-70% (average 58.8%), and 65%-82% (average 75.8%), respectively. Water has an effect on the gas-accessible effective pore space regardless of pore size, and the effect is the strongest in the 4-100 nm range, which may be mainly due to the high content of clay minerals in the Longtan shale. Our studies are of important theoretical significance and application prospects for accurately evaluating the gas-accessible effective pore space of gas shales under actual geological conditions

Structural Analysis of Alkaline β-Mannanase from Alkaliphilic Bacillus sp. N16-5: Implications for Adaptation to Alkaline Conditions

Significant progress has been made in isolating novel alkaline β-mannanases, however, there is a paucity of information concerning the structural basis for alkaline tolerance displayed by these β-mannanases. We report the catalytic domain structure of an industrially important β-mannanase from the alkaliphilic Bacillus sp. N16-5 (BSP165 MAN) at a resolution of 1.6 Å. This enzyme, classified into subfamily 8 in glycosyl hydrolase family 5 (GH5), has a pH optimum of enzymatic activity at pH 9.5 and folds into a classic (β/α)8-barrel. In order to gain insight into molecular features for alkaline adaptation, we compared BSP165 MAN with previously reported GH5 β-mannanases. It was revealed that BSP165 MAN and other subfamily 8 β-mannanases have significantly increased hydrophobic and Arg residues content and decreased polar residues, comparing to β-mannanases of subfamily 7 or 10 in GH5 which display optimum activities at lower pH. Further, extensive structural comparisons show alkaline β-mannanases possess a set of distinctive features. Position and length of some helices, strands and loops of the TIM barrel structures are changed, which contributes, to a certain degree, to the distinctly different shaped (β/α)8-barrels, thus affecting the catalytic environment of these enzymes. The number of negatively charged residues is increased on the molecular surface, and fewer polar residues are exposed to the solvent. Two amino acid substitutions in the vicinity of the acid/base catalyst were proposed to be possibly responsible for the variation in pH optimum of these homologous enzymes in subfamily 8 of GH5, identified by sequence homology analysis and pKa calculations of the active site residues. Mutational analysis has proved that Gln91 and Glu226 are important for BSP165 MAN to function at high pH. These findings are proposed to be possible factors implicated in the alkaline adaptation of GH5 β-mannanases and will help to further understanding of alkaline adaptation mechanism

Fluid mineralization of the Dongtongyu gold deposit in the southern margin of North China craton: Evidence from microthermometry and composition of fluid inclusions

In this study, petrographic, microthermometric, and synchrotron radiation X-ray fluorescence (SRXRF) analyses of fluid inclusions were conducted to shed light on the mineralization mechanism of the Dongtongyu deposit and provide some evidence of the relationship among CO2, Au, and other ore elements (e.g., Cu, Fe, Zn, and Pb) in ore-forming fluids. The ore-forming fluid is characterized as the H2O–CO2–NaCl system with medium–high temperatures and low salinities. Four structural mineralization stages are distinguished: Pyrite-quartz (Stage 1), gold-quartz-pyrite (Stage 2), gold-quartz-polymetallic sulfide (Stage 3), and quartz-calcite (Stage 4). Fluid inclusions in Stages 1–3 are dominated by the H2O–CO2 type, and most of them contain liquid H2O and liquid CO2 at room temperature. The melting temperatures (Tm-CO2 = −82.1°C to −57.5°C) of solid CO2 in Stage 1 are relatively low. The values of Tm-CO2 in Stages 2–3 are quite close, with ranges of −60.5°C to −56.5°C and −59.2°C to −58.6°C, respectively. The melting temperatures of clathrate in Stages 1–3 are −2.7°C to +7.8°C, −5.5°C to +7.8°C, and +3.7°C to +7.2°C. The homogenization temperatures of the CO2 phase in the H2O–CO2 inclusions of the three stages are measured as −7.5°C to +31.7°C, −7.5°C to +29.3°C, and 7.1°C to +24.1°C. The total homogenization temperatures in Stages 1–3 are 180°C–394°C, 202°C–305°C, and 224°C–271°C, with salinities of 4.3 wt.%–18.2 wt% NaCl, 4.3 wt.%–20.0 wt% NaCl, and 5.3 wt.%–11.0 wt% NaCl, respectively. The laser Raman spectroscopy results show that the CO2–H2O inclusions in the quartz veins contain abundant CO2 and CH4. The SRXFR results show that most of the elements, especially As, Te, and Cu, are more enriched in liquid CO2 than in liquid H2O. The elements of Au, Fe, Ni, Cu, and Pb have higher concentrations in H2O–CO2-type fluid inclusions in Stage 2 than other fluid inclusions in Stages 1–2, suggesting that gold mineralization is closely related to CO2-rich fluids. During the fluid evolution process, fluid immiscibility is an important mineralization mechanism of gold. The increase in CO2 and CH4 and the decrease in the fluid temperature might promote fluid immiscibility

A Real-Time FPGA Accelerator Based on Winograd Algorithm for Underwater Object Detection

Real-time object detection is a challenging but crucial task for autonomous underwater vehicles because of the complex underwater imaging environment. Resulted by suspended particles scattering and wavelength-dependent light attenuation, underwater images are always hazy and color-distorted. To overcome the difficulties caused by these problems to underwater object detection, an end-to-end CNN network combined U-Net and MobileNetV3-SSDLite is proposed. Furthermore, the FPGA implementation of various convolution in the proposed network is optimized based on the Winograd algorithm. An efficient upsampling engine is presented, and the FPGA implementation of squeeze-and-excitation module in MobileNetV3 is optimized. The accelerator is implemented on a Zynq XC7Z045 device running at 150 MHz and achieves 23.68 frames per second (fps) and 33.14 fps when using MobileNetV3-Large and MobileNetV3-Small as the feature extractor. Compared to CPU, our accelerator achieves 7.5×–8.7× speedup and 52×–60× energy efficiency

Research and Thinking on the Development of Hospital Informatization under the New Situation

With the vigorous advancement of China’s medical reform and the continuous improvement of medical services, hospitals are increasingly demanding and relying on informatization. It can be said that informatization covers all aspects of hospital business and provide comprehensive, efficient, convenient and automated management and services for the normal operation of the hospital. At present, hospitals have gradually increased their investment in informatization, and the upgrading and transformation of informatization has also been continuously enhanced. However, there are still a large number of problems in the application of hospital informatization management. It is necessary for hospital informatization managers and executors to face relevant problems,understand the tasks and goals of the next stage of hospital informatization development. This paper mainly expounds the development status of hospital information system, lists the common problems in the application of hospital informatization, puts forward reasonable and effective informatization construction methods and strategies, and points out that the construction of integrated platform hospital data warehouse and health care cloud platform is the future development direction of hospital informatization

Evolution of Rheological Behaviors of Styrene-Butadiene-Styrene/Crumb Rubber Composite Modified Bitumen after Different Long-Term Aging Processes

In this study, a new type of composite modified bitumen was developed by blending styrene-butadiene-styrene (SBS) and crumb rubber (CR) with a chemical method to satisfy the durability requirements of waterproofing material in the waterproofing layer of high-speed railway subgrade. A pressure-aging-vessel test for 20, 40 and 80 h were conducted to obtain bitumen samples in different long-term aging conditions. Multiple stress creep recovery (MSCR) tests, linear amplitude scanning tests and bending beam rheometer tests were conducted on three kinds of asphalt binders (SBS modified asphalt, CR modified asphalt and SBS/CR composite modified asphalt) after different long-term aging processes, including high temperature permanent deformation performance, resistance to low temperature thermal and fatigue crack. Meanwhile, aging sensitivities were compared by different rheological indices. Results showed that SBS/CR composite modified asphalt possessed the best properties before and after aging. The elastic property of CR in SBS/CR composite modified asphalt improved the ability to resist low temperature thermal and fatigue cracks at a range of low and middle temperatures. Simultaneously, the copolymer network of SBS and CR significantly improved the elastic response of the asphalt SBS/CR modified asphalt at a range of high temperatures. Furthermore, all test results indicated that the SBS/CR modified asphalt possesses the outstanding ability to anti-aging. SBS/CR is an ideal kind of asphalt to satisfy the demand of 60 years of service life in the subgrade of high speed railway

Elevated serum 4HNE plus decreased serum thioredoxin: Unique feature and implications for acute exacerbation of chronic obstructive pulmonary disease.

Acute exacerbation of chronic obstructive pulmonary disease (AECOPD) is a global problem with high mortality. Its pathogenesis is not fully understood. To reveal new serum feature of AECOPD and their potential implications, we have analyzed 180 serum samples, and found that in the serum of AECOPD patients, 4-hydroxy-2-nonenal (4HNE)-protein adducts are dynamically increased as partial pressure of oxygen (PaO2) drops, which is accompanied by progressively decreasing thioredoxin reductase (TrxR1) and thioredoxin (Trx1), as compared with those of healthy people. This phenomenon is unique, because acute hypoxia patients have 1.1-fold or 1.7-fold higher serum TrxR1 or Trx1 activity, respectively, than healthy people, in keeping with low 4HNE level. Moreover, serum 4HNE-protein adducts may form disulfide-linked complexes with high-molecular-weight, the amount of which is significantly increased during AECOPD. Serum 4HNE-protein adducts include 4HNE-Trx1 adduct and 4HNE-TrxR1 adduct, but only the former is significantly increased during AECOPD. Through cell biology, biochemistry and proteomics methods, we have demonstrated that extracellular 4HNE and 4HNE-Trx1 adduct affect human bronchial epithelial cells via different mechanisms. 4HNE-Trx1 adduct may significantly alter the expression of proteins involved mainly in RNA metabolism, but it has no effect on TrxR1/Trx1 expression and cell viability. On the other hand, low levels of 4HNE promote TrxR1/Trx1 expression and cell viability, while high levels of 4HNE inhibit TrxR1/Trx1 expression and cell viability, during which Trx1, at least in part, mediate the 4HNE action. Our data suggest that increasing serum 4HNE and decreasing serum Trx1 in AECOPD patients are closely related to the pathological processes of the disease. This finding also provides a new basis for AECOPD patients to use antioxidant drugs

Full-Scale Pore Structure Characteristics and the Main Controlling Factors of Mesoproterozoic Xiamaling Shale in Zhangjiakou, Hebei, China

Nanoscale pore structure characteristics and their main controlling factors are key elements affecting the gas storage capacity, permeability, and the accumulation mechanism of shale. A multidisciplinary analytical program was applied to quantify the pore structure of all sizes of Xiamaling shale from Zhangjiakou, Hebei. The result implies that Mercury injection porosimetry (MIP) and low-pressure N2 curves of the samples can be divided into three and four types, respectively, reflecting different connectivity performances. The maximum CO2 adsorbing capacity increases with increasing total organic carbon (TOC) content, pore volume (PV), and surface area (SA) of the micropores are distributed in a three-peak type. The full-scale pore structure distribution characteristics reveal the coexistence of multiple peaks with multiple dominant scales and bi-peak forms with mesopores and micropores. The porosity positively correlates with the TOC and quartz content, but negatively correlates with clay mineral content. Organic matter (OM) is the main contributor to micropore and mesopore development. Smectite and illite/smectite (I/S) assist the development of the PV and SA of pores with different size. Illite promotes the development of the nanoscale PV, but is detrimental to the development of the SA. Thermal maturity controls the evolution of pores with different size, and the evolution model for the TOC-normalized PVs of different diameter scales is established. Residual hydrocarbon is mainly accumulated in micropores sized 0.3 to 1.0 nm and mesopores sized 40 nm, 2 nm and less than 10 nm. Since the samples were extracted, the pore space occupied by residual hydrocarbon was released, resulting in a remarkable increase in PV and SA