Selective enrichment of endogenous peptides by chemically modified porous nanoparticles for peptidome analysis

We report the development of a combined strategy for high capacity, comprehensive enrichment of endogenous peptide from complex biological samples at natural pH condition. MCM-41 nanoparticles with highly ordered nanoscale pores (i.e. 4.8 nm) and high-surface area (i.e. 751 m(2)/g) were synthesized and modified with strong cation-exchange (SCX-MCM-41) and strong anion-exchange (SAX-MCM-41) groups. The modified nanoparticles demonstrated good size-exclusion effect for the adsorption of standard protein lysozyme with molecular weight (MW) of ca. 15 kDa; and the peptides with MW lower than this value can be well adsorbed. Step elution of the enriched peptides with five salt concentrations presented that both modified nanoparticles have high capacity and complementarity for peptides enrichment, and the SAX-MCM-41 nanoparticles has obviously high selectivity for acidic peptides with pI (isoelectric point) lower than 4. Large-scale enrichment of endogenous peptides in 2 mg mouse liver extract was achieved by further combination of SCX-MCM-41 and SAX-MCM-41 with unmodified MCM-41 nanoparticles. On-line 2D nano-LC/MS/MS was applied to analyze the enriched samples, and 2721 unique peptides were identified in total. Two-dimensional analysis of MW versus pI distribution combined with abundance of the identified peptides demonstrated that the three types of nanoparticles have comprehensive complementarity for peptidome enrichment. (c) 2008 Published by Elsevier B.V

Fabrication of Monodisperse Porous Zirconia Microspheres and Their Phosphorylation for Friedel–Crafts Alkylation of Indoles

Monodisperse porous zirconia (ZrO₂) microspheres with nanocrystallized framework were fabricated by impregnation of porous polymer microspheres as a novel hard template with zirconia precursors followed by calcination to remove the template. Porous phosphorylated zirconia (PhZr) microspheres were prepared by further treating porous zirconia microspheres with phosphoric acid. The morphology, structure, and properties of these microspheres were studied by scanning electron microscopy (SEM), transmission electron microscopy (TEM), N₂ adsorption/desorption measurement, FT-IR, and X-ray powder diffraction. The as-prepared zirconia and phosphorylated zirconia microspheres showed uniform particle size and well-defined morphology. The phosphorylated zirconia microspheres served as highly active solid acid catalysts for Friedel–Crafts alkylation of indoles with chalcones and could be reused for 22 cycles with negligible loss of activity. In situ pyridine-adsorbed FT-IR analysis of the best performing PhZr microspheres suggested the presence of both Lewis and Brønsted acid sites, and the total acidity as measured by temperature-programmed desorption of ammonia (NH₃-TPD) was 328 μmol·g^‑1

Additional file 1: Figure S1. of Supramolecular Gel-Templated In Situ Synthesis and Assembly of CdS Quantum Dots Gels

FT-IR spectra of native gel (red line) and dehydrated solution sample after put in drier for 1 month (black line). (DOCX 70 kb