Trading Off Voting Axioms for Privacy

In this paper, we investigate tradeoffs among differential privacy (DP) and several important voting axioms: Pareto efficiency, SD-efficiency, PC-efficiency, Condorcet consistency, and Condorcet loser criterion. We provide upper and lower bounds on the two-way tradeoffs between DP and each axiom. We also provide upper and lower bounds on three-way tradeoffs among DP and every pairwise combination of all the axioms, showing that, while the axioms are compatible without DP, their upper bounds cannot be achieved simultaneously under DP. Our results illustrate the effect of DP on the satisfaction and compatibility of voting axioms

Antidiabetic effects and mechanisms of Cyclocarya paliurus leaf flavonoids via PIK3CA

Cyclocarya paliurus, a novel functional food resource, exhibits significant hypoglycemic and hypolipidemic effects in treating type II diabetes mellitus (T2DM). Flavonoids are the effective medicinal components of C. paliurus; however, their specific mechanisms in the treatment of T2DM need further evaluation. In this study, in vitro experiments, transcriptomic analysis, network pharmacology, and biolayer interferometry were used to investigate the effects of the total flavonoids of C. paliurus (CTFs) on beta-TC-6 cells and elucidate the underlying mechanisms. Nine flavonoids, including velutin, kaempferide, peonidin, apigenin, pelargonidin, 5,6,7-trihydroxyflavone, tangeretin, laricitrin, and 4′-methylnaringenin were found to exert antidiabetic effects. The core ingredients of CTFs could directly interact with PIK3CA and modulate gene expression related to the PI3K-AKT signaling pathway, insulin secretion pathway, insulin signaling pathway, and p53 signaling pathway, and promote beta-TC-6 cell proliferation and increase insulin expression. This study provides scientific evidence to support the use of C. paliurus flavonoids in treating T2DM

Comparative and Phylogenetic Analyses of Complete Chloroplast Genomes of <i>Scrophularia incisa</i> Complex (Scrophulariaceae)

The Scrophularia incisa complex is a group of closely related desert and steppe subshrubs that includes S. incisa, S. kiriloviana and S. dentata, which are the only S. sect. Caninae components found in Northwest China. Based on earlier molecular evidence, the species boundaries and phylogenetic relationships within this complex remain poorly resolved. Here, we characterized seven complete chloroplast genomes encompassing the representatives of the three taxa in the complex and one closely related species, S. integrifolia, as well as three other species of Scrophularia. Comparative genomic analyses indicated that the genomic structure, gene order and content were highly conserved among these eleven plastomes. Highly variable plastid regions and simple sequence repeats (SSRs) were identified. The robust and consistent phylogenetic relationships of the S. incisa complex were firstly constructed based on a total of 26 plastid genomes from Scrophulariaceae. Within the monophyletic complex, a S. kiriloviana individual from Pamirs Plateau was identified as the earliest diverging clade, followed by S. dentata from Tibet, while the remaining individuals of S. kiriloviana from the Tianshan Mountains and S. incisa from Qinghai–Gansu were clustered into sister clades. Our results evidently demonstrate the capability of plastid genomes to improve phylogenetic resolution and species delimitation, particularly among closely related species, and will promote the understanding of plastome evolution in Scrophularia

Identification of postnatal development dependent genes and proteins in porcine epididymis

Abstract Background The epididymis is a highly regionalized tubular organ possesses vectorial functions of sperm concentration, maturation, transport, and storage. The epididymis-expressed genes and proteins are characterized by regional and developmental dependent pattern. However, a systematic and comprehensive insight into the postnatal development dependent changes in gene and protein expressions of porcine epididymis is still lacking. Here, the RNA and protein of epididymis of Duroc pigs at different postnatal development stages were extracted by using commercial RNeasy Midi kit and extraction buffer (7 M Urea, 2 M thiourea, 3% CHAPS, and 1 mM PMSF) combined with sonication, respectively, which were further subjected to transcriptomic and proteomic profiling. Results Transcriptome analysis indicated that 198 and 163 differentially expressed genes (DEGs) were continuously up-regulated and down-regulated along with postnatal development stage changes, respectively. Most of the up-regulated DEGs linked to functions of endoplasmic reticulum and lysosome, while the down-regulated DEGs mainly related to molecular process of extracellular matrix. Moreover, the following key genes INSIG1, PGRMC1, NPC2, GBA, MMP2, MMP14, SFRP1, ELN, WNT-2, COL3A1, and SPARC were highlighted. A total of 49 differentially expressed proteins (DEPs) corresponding to postnatal development stages changes were uncovered by the proteome analysis. Several key proteins ACSL3 and ACADM, VDAC1 and VDAC2, and KNG1, SERPINB1, C3, and TF implicated in fatty acid metabolism, voltage-gated ion channel assembly, and apoptotic and immune processes were emphasized. In the integrative network, the key genes and proteins formed different clusters and showed strong interactions. Additionally, NPC2, COL3A1, C3, and VDAC1 are located at the hub position in each cluster. Conclusions The identified postnatal development dependent genes and proteins in the present study will pave the way for shedding light on the molecular basis of porcine epididymis functions and are useful for further studies on the specific regulation mechanisms responsible for epididymal sperm maturation

Immune Landscape and an RBM38-Associated Immune Prognostic Model with Laboratory Verification in Malignant Melanoma

Background: Current studies have revealed that RNA-binding protein RBM38 is closely related to tumor development, while its role in malignant melanoma remains unclear. Therefore, this research aimed to investigate the function of RBM38 in melanoma and the prognosis of the disease. Methods: Functional experiments (CCK-8 assay, cell colony formation, transwell cell migration/invasion experiment, wound healing assay, nude mouse tumor formation, and immunohistochemical analysis) were applied to evaluate the role of RBM38 in malignant melanoma. Immune-associated differentially expressed genes (DEGs) on RBM38 related immune pathways were comprehensively analyzed based on RNA sequencing results. Results: We found that high expression of RBM38 promoted melanoma cell proliferation, invasion, and migration, and RBM38 was associated with immune infiltration. Then, a five-gene (A2M, NAMPT, LIF, EBI3, and ERAP1) model of RBM38-associated immune DEGs was constructed and validated. Our signature showed superior prognosis capacity compared with other melanoma prognostic signatures. Moreover, the risk score of our signature was connected with the infiltration of immune cells, immune-regulatory proteins, and immunophenoscore in melanoma. Conclusions: We constructed an immune prognosis model using RBM38-related immune DEGs that may help evaluate melanoma patient prognosis and immunotherapy modalities

Eu-Doped Zeolitic Imidazolate Framework-8 Modified Mixed-Crystal TiO2 for Efficient Removal of Basic Fuchsin from Effluent

Zeolitic imidazolate framework-8 (ZIF-8) was doped with a rare-earth metal, Eu, using a solvent synthesis method evenly on the surface of a mixed-crystal TiO2(Mc-TiO2) structure in order to produce a core&ndash;shell structure composite ZIF-8(Eu)@Mc-TiO2 adsorption photocatalyst with good adsorption and photocatalytic properties. The characterisation of ZIF-8(Eu)@Mc-TiO2 was performed via X-ray diffraction (XRD), scanning electron microscopy (SEM), transmission electron microscopy (TEM), X-ray photoelectron spectroscopy (XPS), Brunauer&ndash;Emmett&ndash;Teller analysis (BET) and ultraviolet&ndash;visible light differential reflectance spectroscopy (UV-DRs). The results indicated that Eu-doped ZIF-8 was formed evenly on the Mc-TiO2 surface, a core&ndash;shell structure formed and the light-response range was enhanced greatly. The ZIF-8(Eu)@Mc-TiO2 for basic fuchsin was investigated to validate its photocatalytic performance. The effect of the Eu doping amount, basic fuchsin concentration and photocatalyst dosage on the photocatalytic efficiency were investigated. The results revealed that, when 5%-Eu-doped ZIF-8(Eu)@Mc-TiO2 (20 mg) was combined with 30 mg/L basic fuchsin (100 mL) under UV irradiation for 1 h, the photocatalytic efficiency could reach 99%. Further, it exhibited a good recycling performance. Thus, it shows certain advantages in its degradation rate and repeatability compared with previously reported materials. All of these factors suggested that, in an aqueous medium, ZIF-8(Eu)@Mc-TiO2 is an eco-friendly, sustainable and efficient material for the photocatalytic degradation of basic fuchsin

Genomic insights into the clonal reproductive Opuntia cochenillifera: mitochondrial and chloroplast genomes of the cochineal cactus for enhanced understanding of structural dynamics and evolutionary implications

BackgroundThe cochineal cactus (Opuntia cochenillifera), notable for its substantial agricultural and industrial applications, predominantly undergoes clonal reproduction, which presents significant challenges in breeding and germplasm innovation. Recent developments in mitochondrial genome engineering offer promising avenues for introducing heritable mutations, potentially facilitating selective sexual reproduction through the creation of cytoplasmic male sterile genotypes. However, the lack of comprehensive mitochondrial genome information for Opuntia species hinders these efforts. Here, we intended to sequence and characterize its mitochondrial genome to maximize the potential of its genomes for evolutionary studies, molecular breeding, and molecular marker developments.ResultsWe sequenced the total DNA of the O. cochenillifera using DNBSEQ and Nanopore platforms. The mitochondrial genome was then assembled using a hybrid assembly strategy using Unicycler software. We found that the mitochondrial genome of O. cochenillifera has a length of 1,156,235 bp, a GC content of 43.06%, and contains 54 unique protein-coding genes and 346 simple repeats. Comparative genomic analysis revealed 48 homologous fragments shared between mitochondrial and chloroplast genomes, with a total length of 47,935 bp. Additionally, the comparison of mitochondrial genomes from four Cactaceae species highlighted their dynamic nature and frequent mitogenomic reorganizations.ConclusionOur study provides a new perspective on the evolution of the organelle genome and its potential application in genetic breeding. These findings offer valuable insights into the mitochondrial genetics of Cactaceae, potentially facilitating future research and breeding programs aimed at enhancing the genetic diversity and adaptability of O. cochenillifera by leveraging its unique mitochondrial genome characteristics