Reexamining charmless B\to PV decays in QCD factorization approach

Using the QCD factorization approach, we reexamine the two-body hadronic charmless $B$-meson decays to final states involving a pseudoscalar~($P$) and a vector~($V$) meson, with inclusion of the penguin contractions of spectator-scattering amplitudes induced by the $b\to D g^\ast g^\ast$~(where $D=d$ or $s$, and $g^\ast$ denotes an off-shell gluon) transitions, which are of order $\alpha_s^2$. Their impacts on the CP-averaged branching ratios and CP-violating asymmetries are examined. We find that these higher order penguin contraction contributions have significant impacts on some specific decay modes. Since $B\to \pi K^{\ast}$, $K \rho$ decays involve the same electro-weak physics as $B\to \pi K$ puzzles, we present a detailed analysis of these decays and find that the five R-ratios for $B\to \pi K^{\ast}$, $K \rho$ system are in agreement with experimental data except for $R(\pi K^*)$. Generally, these new contributions are found to be important for penguin-dominated $B\to PV$ decays.Comment: 45 pages, 12 figures. Theoretical uncertainties considered. Gauge invariance proved. Version to appear in PR

Cleavage specificity of chloroplast and nuclear tRNA 3'-processing nucleases.

This is the publisher's version. Copyright 2015 by the American Society for Microbiology.tRNAs in eukaryotic nuclei and organelles are synthesized as precursors lacking the 3'-terminal CCA sequence and possessing 5' (leader) and 3' (trailer) extensions. Nucleolytic cleavage of the 3' trailer and addition of CCA are therefore required for formation of functional tRNA 3' termini. Many chloroplast tRNA genes encode a C at position 74 which is not removed during processing but which can be incorporated as the first base of the CCAOH terminus. Sequences downstream of nucleotide 74, however, are always removed. Synthetic yeast pre-tRNA(Phe) substrates containing the complete CCA74-76 sequence were processed with crude or partially purified chloroplast enzyme fractions. The 3'-extended substrates (tRNA-CCA-trailer) were cleaved exclusively between nucleotides 74 and 75 to give tRNA-COH, whereas a 3'-mature transcript (tRNA-CCAOH) was not cleaved at all. A 5'-, 3'-extended chloroplast tRNA-CAG-trailer was also processed entirely to tRNA-COH. Furthermore, a 5'-mature, 3'-extended yeast pre-tRNA(Phe) derivative, tRNA-ACA-trailer, in which C74 was replaced by A, was cleaved precisely after A74. In contrast, we found that a partially purified enzyme fraction (a nuclear/cytoplasmic activity) from wheat embryo cleaved the 3'-extended yeast tRNA(Phe) precursors between nucleotides 73 and 74 to give tRNA(OH). This specificity is consistent with that of all previously characterized nuclear enzyme preparations. We conclude that (i) chloroplast tRNA 3'-processing endonuclease cleaves after nucleotide 74 regardless of the nature of the surrounding sequences; (ii) this specificity differs from that of the plant nuclear/cytoplasmic processing nuclease, which cleaves after base 73; and (iii) since 3'-mature tRNA is not a substrate for either activity, these 3' nucleases must require substrates possessing a 3'-terminal extension that extends past nucleotide 76. This substrate specificity may prevent mature tRNA from counterproductive cleavage by the 3' processing system

Chloroplast ribonuclease P does not utilize the ribozyme-type pre-tRNA cleavage mechanism.

This is the published version. Copyright 2000 by the RNA Society.The transfer RNA 5' maturation enzyme RNase P has been characterized in Bacteria, Archaea, and Eukarya. The purified enzyme from all three kingdoms is a ribonucleoprotein containing an essential RNA subunit; indeed, the RNA subunit of bacterial RNase P RNA is the sole catalytic component. In contrast, the RNase P activity isolated from spinach chloroplasts lacks an RNA component and appears to function as a catalytic protein. Nonetheless, the chloroplast enzyme recognizes a pre-tRNA substrate for E. coli RNase P and cleaves it as efficiently and precisely as does the bacterial enzyme. To ascertain whether there are differences in catalytic mechanism between an all-RNA and an all-protein RNase P, we took advantage of the fact that phosphodiester bond selection and hydrolysis by the E. coli RNase P ribozyme is directed by a Mg2+ ion coordinated to the nonbridging pro-Rp oxygen of the scissile bond, and is blocked by sulfur replacement of this oxygen. We therefore tested the ability of the chloroplast enzyme to process a precursor tRNA containing this sulfur substitution. Partially purified RNase P from spinach chloroplasts can accurately and efficiently process phosphorothioate-substituted pre-tRNAs; cleavage occurs exclusively at the thio-containing scissile bond. The enzymatic throughput is fivefold slower, consistent with a general chemical effect of the phosphorothioate substitution rather than with a metal coordination deficiency. The chloroplast RNase P reaction mechanism therefore does not involve a catalytic Mg2+ bonded to the pro-Rp phosphate oxygen, and hence is distinct from the mechanism of the bacterial ribozyme RNase P

Catheter Ablation of Atrial Fibrillation: Where Are We?

Atrial fibrillation (AF) is the commonest cardiac arrhythmia, with significant morbidity and mortality. More than half of patients with AF are still symptomatic despite adequate anticoagulation and rate control. If antiarrhythmic drugs are ineffective or poorly tolerated, AF patients are then typically treated with catheter ablation to restore sinus rhythm. In the past 20 years, AF ablation has developed from a specialized, experimental procedure into a common treatment in the cardiovascular field. Various ablation techniques and mapping technologies have been described and are continuing to evolve for increased safety and efficacy. An incomplete list of such techniques and technologies would include focal and segmental, circumferential and linear, complex fractionated atrial electrogram, ganglionated plexus, focal impulse and rotor modulation, body surface potential mapping–guided, real-time MRI–guided, cryoballoon, visually guided laser balloon, radiofrequency hot balloon, contact force sensing catheter, multielectrode catheter, and hybrid ablations. This review examines the history of invasive AF treatment and its evolution into catheter ablation but mainly focuses on the discussion of various ablation techniques and technologies leading to our current understanding of the ablation therapy of this most common arrhythmia

Enhanced soil aggregate stability limits colloidal phosphorus loss potentials in agricultural systems

BackgroundColloid-facilitated phosphorus (P) transport is recognized as an important pathway for the loss of soil P in agricultural systems; however, information regarding soil aggregate-associated colloidal P (Pcoll) is lacking. To elucidate the effects of aggregate size on the potential loss of Pcoll in agricultural systems, soils (0–20 cm depth) from six land-use types were sampled in the Zhejiang Province in the Yangtze River Delta region, China. The aggregate size fractions (2–8 mm, 0.26–2 mm, 0.053–0.26 mm and < 0.053 mm) were separated using the wet sieving method. Colloidal P and other soil parameters in aggregates were analyzed.ResultsOur study demonstrated that 0.26–2 mm small macroaggregates had the highest total P (TP) content. In acidic soils, the highest Pcoll content was observed in the 0.26- to 2-mm-sized aggregates, while the lowest was reported in the < 0.053 mm (silt + clay)-sized particles, the opposite of that revealed in alkaline and neutral soils. Paddy soils contained less Pcoll than other land-use types. The proportion of Pcoll in total dissolved P (TDP) was dominated by < 0.053 mm (silt + clay)-sized particles. Aggregate size strongly influenced the loss potential of Pcoll in paddy soils, where Pcoll contributed up to 83% TDP in the silt + clay-sized particles. The Pcoll content was positively correlated with TP, Al, Fe, and the mean weight diameter. Aggregate-associated total carbon (TC), total nitrogen (TN), C/P, and C/N had significant negative effects on the contribution of Pcoll to potential soil P loss. The Pcoll content of the aggregates was controlled by the aggregate-associated TP and Al content, as well as the soil pH value. The potential loss of Pcoll from aggregates was controlled by its organic matter content.ConclusionWe concluded that management practices that increase soil aggregate stability or its organic carbon content will limit Pcoll loss in agricultural systems

Organic Carbon Linkage with Soil Colloidal Phosphorus at Regional and Field Scales: Insights from Size Fractionation of Fine Particles

Nano and colloidal particles (1–1000 nm) play important roles in phosphorus (P) migration and loss from agricultural soils; however, little is known about their relative distribution in arable crop soils under varying agricultural geolandscapes at the regional scale. Surface soils (0–20 cm depth) were collected from 15 agricultural fields, including two sites with different carbon input strategies, in Zhejiang Province, China, and water-dispersible nanocolloids (0.6–25 nm), fine colloids (25–160 nm), and medium colloids (160–500 nm) were separated and analyzed using the asymmetrical flow field flow fractionation technique. Three levels of fine-colloidal P content (3583–6142, 859–2612, and 514–653 μg kg–1) were identified at the regional scale. The nanocolloidal fraction correlated with organic carbon (Corg) and calcium (Ca), and the fine colloidal fraction with Corg, silicon (Si), aluminum (Al), and iron (Fe). Significant linear relationships existed between colloidal P and Corg, Si, Al, Fe, and Ca and for nanocolloidal P with Ca. The organic carbon controlled colloidal P saturation, which in turn affected the P carrier ability of colloids. Field-scale organic carbon inputs did not change the overall morphological trends in size fractions of water-dispersible colloids. However, they significantly affected the peak concentration in each of the nano-, fine-, and medium-colloidal P fractions. Application of chemical fertilizer with carbon-based solid manure and/or modified biochar reduced the soil nano-, fine-, and medium-colloidal P content by 30–40%; however,the application of chemical fertilizer with biogas slurry boosted colloidal P formation. This study provides a deep and novel understanding of the forms and composition of colloidal P in agricultural soils and highlights their spatial regulation by soil characteristics and carbon inputs

Atomic-Scale Tracking Phase Transition Dynamics of Berezinskii-Kosterlitz-Thouless Polar Vortex-Antivortex

Particle-like topologies, such as vortex-antivortex (V-AV) pairs, have garnered significant attention in the field of condensed matter. However, the detailed phase transition dynamics of V-AV pairs, as exemplified by self-annihilation, motion, and dissociation, have yet to be verified in real space due to the lack of suitable experimental techniques. Here, we employ polar V-AV pairs as a model system and track their transition pathways at atomic resolution with the aid of in situ (scanning) transmission electron microscopy and phase field simulations. We demonstrate the absence of a Berezinskii-Kosterlitz-Thouless phase transition between the room-temperature quasi-long-range ordered ground phase and the high-temperature disordered phase. Instead, we observe polarization suppression in bound V-AV pairs as the temperature increases. Furthermore, electric fields can promote the vortex and antivortex to approach each other and annihilate near the interface. The elucidated intermediate dynamic behaviors of polar V-AV pairs under thermal- and electrical-fields lay the foundation for their potential applications in electronic devices. Moreover, the dynamic behaviors revealed at atomic scale provide us new insights into understanding topological phase of matter and their topological phase transitions.Comment: 19 pages and 4 figure