De Novo Assembly of Mud Loach (Misgurnus anguillicaudatus) Skin Transcriptome to Identify Putative Genes Involved in Immunity and Epidermal Mucus Secretion

Fish skin serves as the first line of defense against a wide variety of chemical, physical and biological stressors. Secretion of mucus is among the most prominent characteristics of fish skin and numerous innate immune factors have been identified in the epidermal mucus. However, molecular mechanisms underlying the mucus secretion and immune activities of fish skin remain largely unclear due to the lack of genomic and transcriptomic data for most economically important fish species. In this study, we characterized the skin transcriptome of mud loach using Illumia paired-end sequencing. A total of 40364 unigenes were assembled from 86.6 million (3.07 gigabases) filtered reads. The mean length, N50 size and maximum length of assembled transcripts were 387, 611 and 8670 bp, respectively. A total of 17336 (43.76%) unigenes were annotated by blast searches against the NCBI non-redundant protein database. Gene ontology mapping assigned a total of 108513 GO terms to 15369 (38.08%) unigenes. KEGG orthology mapping annotated 9337 (23.23%) unigenes. Among the identified KO categories, immune system is the largest category that contains various components of multiple immune pathways such as chemokine signaling, leukocyte transendothelial migration and T cell receptor signaling, suggesting the complexity of immune mechanisms in fish skin. As for mucin biosynthesis, 37 unigenes were mapped to 7 enzymes of the mucin type O-glycan biosynthesis pathway and 8 members of the polypeptide N-acetylgalactosaminyltransferase family were identified. Additionally, 38 unigenes were mapped to 23 factors of the SNARE interactions in vesicular transport pathway, indicating that the activity of this pathway is required for the processes of epidermal mucus storage and release. Moreover, 1754 simple sequence repeats (SSRs) were detected in 1564 unigenes and dinucleotide repeats represented the most abundant type. These findings have laid the foundation for further understanding the secretary processes and immune functions of loach skin mucus.Fish skin serves as the first line of defense against a wide variety of chemical, physical and biological stressors. Secretion of mucus is among the most prominent characteristics of fish skin and numerous innate immune factors have been identified in the epidermal mucus. However, molecular mechanisms underlying the mucus secretion and immune activities of fish skin remain largely unclear due to the lack of genomic and transcriptomic data for most economically important fish species. In this study, we characterized the skin transcriptome of mud loach using Illumia paired-end sequencing. A total of 40364 unigenes were assembled from 86.6 million (3.07 gigabases) filtered reads. The mean length, N50 size and maximum length of assembled transcripts were 387, 611 and 8670 bp, respectively. A total of 17336 (43.76%) unigenes were annotated by blast searches against the NCBI non-redundant protein database. Gene ontology mapping assigned a total of 108513 GO terms to 15369 (38.08%) unigenes. KEGG orthology mapping annotated 9337 (23.23%) unigenes. Among the identified KO categories, immune system is the largest category that contains various components of multiple immune pathways such as chemokine signaling, leukocyte transendothelial migration and T cell receptor signaling, suggesting the complexity of immune mechanisms in fish skin. As for mucin biosynthesis, 37 unigenes were mapped to 7 enzymes of the mucin type O-glycan biosynthesis pathway and 8 members of the polypeptide N-acetylgalactosaminyltransferase family were identified. Additionally, 38 unigenes were mapped to 23 factors of the SNARE interactions in vesicular transport pathway, indicating that the activity of this pathway is required for the processes of epidermal mucus storage and release. Moreover, 1754 simple sequence repeats (SSRs) were detected in 1564 unigenes and dinucleotide repeats represented the most abundant type. These findings have laid the foundation for further understanding the secretary processes and immune functions of loach skin mucus

Biphenyls from aerial parts of Ribes takare

Three new biphenyls, 4,7,8-trimethoxy-2,3-methylenedioxydibenzofuran (1), 7-hydroxy-4,8dimethoxy-2,3-methylenedioxydibenzofuran (2), and 3',5-dimethoxy-3,4-methylenedioxybiphenyl (3), along with eighteen known compounds (4-21) were isolated from the aerial part of Ribes takare D. Don. Their structures were elucidated on the basis of spectroscopic data. Compound 1 and compound 2 showed mild alpha-glucosidase inhibitory activity. (C) 2013 Guo-You Li and Dong-Mei Fang. Published by Elsevier B.V. on behalf of Chinese Chemical Society. All rights reserved

Optimizing the preheating temperature of hot rolled slab from the perspective of the oxidation kinetic

Decreasing the preheating temperature is an effective step to control the energy consumption in the hot rolling process. In order to obtain the lowest preheating temperature to prepare enough thickness of oxide scale in the hot rolling process, the oxidation resistance of commercial steel samples with different Al and Si contents were investigated in this paper. The results indicate that both Al and Si based oxides form at the steel-oxides interface as diffusion barrier but Al provide stronger diffusion resistance than Si in the diffusion-controlling oxidation region. Meanwhile, a three-dimensional oxidation kinetic model has been adopted to depict the oxidation behavior of four types of commercial steel. The oxidation process of automotive steel sample containing with low alloy elements is kinetically determined by interface chemical reaction. Its activation energy is 55.2 ± 6.9 kJ/mol. As for silicon steel containing with relative high alloy elements, its controlling process is determined by diffusion step at low temperature and controlled by chemical reaction rate at high temperature. In order to obtain enough thickness of oxide scale, the lowest preheating temperature of different types steel range from high to low should be the steel with high content of Al (1180 °C), the steel with high content of Si and low content of Al (1130 °C) and the steel with high contents of Si and Al (1030 °C). (OLD) MSE-3Team Yongxiang Yan

Sustainable designed pavement materials

This Special Issue "Sustainable Designed Pavement Materials" has been proposed and organized as a means to present recent developments in the field of environmentally-friendly designed pavement materials. For this reason, articles included in this special issue relate to different aspects of pavement materials, from industry solid waste recycling to pavement materials recycling, from pavement materials modification to asphalt performance characterization, from pavement defect detection to pavement maintenance, and from asphalt pavement to cement concrete pavement, as highlighted in this editorial.Pavement Engineerin

Hourly and Daily Urban Water Demand Predictions Using a Long Short-Term Memory Based Model

This case study uses a long short-term memory (LSTM)-based model to predict short-term urban water demands for the Hefei City of China. The performance of the LSTM-based model is compared with the autoregressive integrated moving average (ARIMA) model, the support vector regression (SVR) model, and the random forests (RF) model based on data with time resolutions ranging from 15 min to 24 h. Additionally, this paper investigates the performance of the LSTM-based model in predicting multiple successive data points. Results show that the LSTM-based model can offer predictions with improved accuracy than the other models when dealing with data with high time resolutions, data points with abrupt changes, and data with a relatively high uncertainty level. It is also observed that the LSTM-based model exhibits the best performance in predicting multiple successive water demands with high time resolutions. In addition, the inclusion of external parameters (e.g., temperature) cannot enhance the performance of the LSTM-based model, but it can improve ARIMAX's prediction ability (ARIMAX is the ARIMA with variables). These observations provide additional and improved evaluations regarding the LSTM-based models used for short-term urban water demand forecasting, thereby enabling their wider adoption in practical applications. Accepted Author ManuscriptSanitary Engineerin

Critical factors for effective resident participation in neighborhood rehabilitation in Wuhan, China: From the perspectives of diverse stakeholders

Resident participation is essential for neighborhood rehabilitation. It requires the active involvement of residents and efficient management by organizers. To improve the effectiveness of resident participation, it is necessary to understand the critical success factors (CSFs) underlying it. However, previous research has examined the critical factors from a single-stakeholder perspective, overlooking potential differences in perceptions among stakeholders with diverse roles and rehabilitation experiences. Based on 30 interviews and 255 questionnaires from six stakeholder groups in Wuhan, China, this study explores how the perception of critical factors for effective resident participation varies among local government, community-based organization, designer, contractor, consulting party, and resident. Thirty-seven factors were identified and compared among the stakeholders. Financial Incentive (for participation organizers) was identified as the most critical factor for effective resident participation, followed by Information Disclosure and Transparency, and Trust. Results from the analysis of variance (ANOVA) show that the six groups differed significantly in the importance of most factors (25/37), especially in Participant Education and Prejudice against the Working Group. Interview results indicate that the COVID-19 pandemic and rehabilitation experience changed stakeholders’ perceived importance of some factors. Specifically, in future RP initiatives, extra emphasis could be placed on Trait and Capacity (of the working group) and Participation-assistance Technologies. Stakeholders regarded these two factors as more critical as their rehabilitation experience accumulated. By understanding stakeholders' conflicting and changing perceptions of effective resident participation, suggestions were proposed to each stakeholder group to fulfill their distinct participation objectives and improve the overall effectiveness of participation practices.Design & Construction ManagementReal Estate Managemen

Strength formation mechanism and performance of steel slag self-compacting epoxy resin concrete

A self-compacting steel slag epoxy resin concrete (SERC) was designed with steel slag as aggregate and epoxy resin as binder for rapid repair of road expansion joints and pavement. At the same time, a group of self-compacting basalt epoxy resin concrete (BERC) with basalt as coarse aggregate and limestone as fine aggregate was set up as the control group. The element analysis and micro morphology of SERC and BERC were studied by X-ray fluorescence spectrometry (XRF) and scanning electron microscope (SEM) to reveal the strength-forming mechanism of the two epoxy resin concretes. The cube compression test and Marshall stability test were used to study the effect of the strength formation rate and temperature of SERC and BERC on the strength. In addition, the high-temperature stability, low-temperature crack resistance, water damage resistance, fatigue resistance and interlayer bonding properties of SERC and BERC were also studied. The results showed that both SERC and BERC have good mechanical properties, high temperature properties and good bonding properties, and the low-temperature crack resistance and fatigue properties of SERC are better than that of BERC. According to the verification of the actual project that has been in service for one year, SERC can be perfectly used for road expansion joints.Green Open Access added to TU Delft Institutional Repository 'You share, we take care!' - Taverne project https://www.openaccess.nl/en/you-share-we-take-care Otherwise as indicated in the copyright section: the publisher is the copyright holder of this work and the author uses the Dutch legislation to make this work public.Pavement Engineerin

Microscopic insights into poly- and mono-crystalline methane hydrate dissociation in Na-montmorillonite pores at static and dynamic fluid conditions

Knowledge on the kinetics of gas hydrate dissociation in clay pores at static and dynamic fluid conditions is a fundamental scientific issue for improving gas production efficiency from hydrate deposits using thermal stimulation and depressurization respectively. Here, molecular dynamics simulations were used to investigate poly- and mono-crystalline methane hydrates in Na-montmorillonite clay nanopores. Simulation results show that hydrate dissociation is highly sensitive to temperature and pressure gradients, but their effects differ. Temperature changes increase thermal instability of water and gas molecules, leading to layer-by-layer dissociation from the outer surface. Under flow conditions, laminar flow predominates in nano-pores, and non-Darcy flow occurs due to clay-fluid interactions. Viscous flow disrupts hydrogen bonding at the hydrate surface, enhancing kinetic instability of water. Grain boundaries of polycrystalline hydrates are less stable compared to bulk phases and preferentially decompose, forming new dissociation fronts. This accelerates dissociation compared to monocrystalline hydrates. Fracture occurs at the grain boundaries of polycrystalline hydrate in the fluid, resulting in separate hydrate crystal grains. This fracture process further accelerates hydrate dissociation. In flow systems, methane nanobubbles form in fluid and readily transport with fluid flow. Unlike surface nanobubbles at static conditions, these liquid nanobubbles exhibit mobility. The findings of this study can contribute to a better understanding of the complex phase transition behavior of hydrate in confined environment, and provide theoretical support for improving production control technology.Green Open Access added to TU Delft Institutional Repository 'You share, we take care!' - Taverne project https://www.openaccess.nl/en/you-share-we-take-care Otherwise as indicated in the copyright section: the publisher is the copyright holder of this work and the author uses the Dutch legislation to make this work public.Engineering Thermodynamic

Analysis of Urban Built Environment Impacts on Outdoor Physical Activities: A Case Study in China

Outdoor physical activities can promote public health and they are largely influenced by the built environment in different urban settings. Understanding the association between outdoor physical activities and the built environment is important for promoting a high quality of life. Existing studies typically focus on one type of outdoor activity using interview-based small samples and are often lack of systematic understanding of the activities' intensity and frequency. In this study, we intend to gain deeper insight into how the built environment influences physical activities using the data extracted from individual's wearables and other open data sources for integrated analysis. Multi-linear regression with logarithm transformation is applied to perform the analysis using the data from Changsha, China. We found that built environment impacts on outdoor physical activities in Changsha are not always consistent with similar studies' results in other cities. The most effective measures to promote outdoor physical activities are the provision of good arterial and secondary road networks, community parks, among others in Changsha. The results shed light on future urban planning practices in terms of promoting public healthDesign & Construction Managemen

A new operando surface restructuring pathway via ion-pairing of catalyst and electrolyte for water oxidation

The highly efficient and stable electrolysis needs the rational control of the catalytically active interface during the reactions. Here we report a new operando surface restructuring pathway activated by pairing catalyst and electrolyte ions. Using SrCoO3-δ-based perovskites as model catalysts, we unveil the critical role of matching the catalyst properties with the electrolyte conditions in modulating catalyst ion leaching and steering surface restructuring processes toward efficient oxygen evolution reaction catalysis in both pH-neutral and alkaline electrolytes. Our results regarding multiple perovskites show that the catalyst ion leaching is controlled by catalyst ion solubility and anions of the electrolyte. Only when the electrolyte cations are smaller than catalyst's leaching cations, the formation of an outer amorphous shell can be triggered via backfilling electrolyte cations into the cationic vacancy at the catalyst surface under electrochemical polarization. Consequently, the current density of reconstructed SrCoO3-δ is increased by 21 folds compared to the pristine SrCoO3-δ at 1.75 V vs reversible hydrogen electrode and outperforms the benchmark IrO2 by 2.1 folds and most state-of-the-art electrocatalysts in the pH-neutral electrolyte. Our work could be a starting point to rationally control the electrocatalyst surface restructuring via matching the compositional chemistry of the catalyst with the electrolyte properties.ChemE/Materials for Energy Conversion and Storag