Prochloron research

The purpose was to prepare Prochloron photosynthetic membranes for the isolation of the two major chlorophyll-proteins, the P700-chlorophyll a-protein and the light-harvesting chlorophyll a/b-protein, using SDS-polyacrylamide gel electrophoresis. The prepared proteins (purified) were examined for their cross-reactivity to polyclonal antibodies prepared from higher plant proteins. In addition, material was prepared for electron microscopy, and isolation of the DNA for determination of its general complexity (COT analysis) and similarity to barley chloroplast DNA and Anabaena DNA by using restriction-endonuclease analysis. Kleinschmidt spreads of the DNA were in the electron microscope to identify and measure the extent and size of the circlar DNA

Applications of DFT to the theory of twentieth-century harmony

Music theorists have only recently, following groundbreaking work by Quinn, recognized the potential for the DFT on pcsets, initially proposed by Lewin, to serve as the foundation of a theory of harmony for the twentieth century. This paper investigates pcset “arithmetic” – subset structure, transpositional combination, and interval content – through the lens of the DFT. It discusses relationships between interval classes and DFT magnitudes, considers special properties of dyads, pcset products, and generated collections, and suggest methods of using the DFT in analysis, including interpreting DFT magnitudes, using phase spaces to understand subset structure, and interpreting the DFT of Lewin’s interval function. Webern’s op. 5/4 and Bartok’s String Quartet 4, iv, are discussed.Accepted manuscrip

Non-perturbative embedding of local defects in crystalline materials

We present a new variational model for computing the electronic first-order density matrix of a crystalline material in presence of a local defect. A natural way to obtain variational discretizations of this model is to expand the difference Q between the density matrix of the defective crystal and the density matrix of the perfect crystal, in a basis of precomputed maximally localized Wannier functions of the reference perfect crystal. This approach can be used within any semi-empirical or Density Functional Theory framework.Comment: 13 pages, 4 figure

Additional evidence for the migration of clay upon heating of clay–polypropylene nanocomposites from X-ray photoelectron spectroscopy (XPS)

The explanation for reduction in the peak heat release rate of polymer–clay nanocomposites which is normally accepted is that clay accumulates at the surface, forming a thermal shield which is also a barrier to mass transport. The process by which this clay arrives at the surface has never been described in print but the common assumption is that pyrolysis is required for clay accumulation to occur. In this work, X-ray photoelectron spectroscopy, a tool much more sensitive in surface analysis than conventional techniques, is used to probe the surface of polypropylene–clay nanocomposites that have been annealed at relatively low temperatures, well below that required for pyrolysis. The composition of the surface changes with time and temperature of annealing, which provide a strong indication that the clay at the surface undergoes chemical change at fairly low temperatures

Free serum haemoglobin is associated with brain atrophy in secondary progressive multiple sclerosis

Background: A major cause of disability in secondary progressive multiple sclerosis (SPMS) is progressive brain atrophy, whose pathogenesis is not fully understood. The objective of this study was to identify protein biomarkers of brain atrophy in SPMS. Methods: We used surface-enhanced laser desorption-ionization time-of-flight mass spectrometry to carry out an unbiased search for serum proteins whose concentration correlated with the rate of brain atrophy,measured by serial MRI scans over a 2-year period in a well-characterized cohort of 140 patients with SPMS. Protein species were identified by liquid chromatography-electrospray ionization tandem mass spectrometry. Results: There was a significant (p<0.004) correlation between the rate of brain atrophy and a rise in the concentration of proteins at 15.1 kDa and 15.9 kDa in the serum. Tandem mass spectrometry identified these proteins as alpha-haemoglobin and beta-haemoglobin, respectively. The abnormal concentration of free serum haemoglobin was confirmed by ELISA (p<0.001). The serum lactate dehydrogenase activity was also highly significantly raised (p<10 ) in patients with secondary progressive multiple sclerosis. Conclusions: An underlying low-grade chronic intravascular haemolysis is a potential source of the iron whose deposition along blood vessels in multiple sclerosis plaques contributes to the neurodegeneration and consequent brain atrophy seen in progressive disease. Chelators of free serum iron will be ineffective in preventing this neurodegeneration, because the iron (Fe ) is chelated by haemoglobin.This work was supported by the Wellcome Trust [100291]; Medical Research Council [MR K019090]; National Institute of Health Research; University College London Hospitals/UCL Biomedical Research Centr

Relativistic Iron Lines in Galactic Black Holes: Recent Results and Lines in the ASCA Archive

Recent observations with Chandra and XMM-Newton, aided by broad-band spectral coverage from RXTE, have revealed skewed relativistic iron emission lines in stellar-mass Galactic black hole systems. Such systems are excellent laboratories for testing General Relativity, and relativistic iron lines provide an important tool for making such tests. In this contribution to the Proceedings of the 10th Annual Marcel Grossmann Meeting on General Relativity, we briefly review recent developments and present initial results from fits to archival ASCA observations of Galactic black holes. It stands to reason that relativistic effects, if real, should be revealed in many systems (rather than just one or two); the results of our archival work have borne-out this expectation. The ASCA spectra reveal skewed, relativistic lines in XTE J1550-564, GRO J1655-40, GRS 1915+105, and Cygnus X-1.Comment: to appear in the proc. of the 10th Annual Marcel Grossmann Meeting on General Relativity, 5 pages, 1 figure, uses specific .cls and .sty file

On the Robustness of NK-Kauffman Networks Against Changes in their Connections and Boolean Functions

NK-Kauffman networks {\cal L}^N_K are a subset of the Boolean functions on N Boolean variables to themselves, \Lambda_N = {\xi: \IZ_2^N \to \IZ_2^N}. To each NK-Kauffman network it is possible to assign a unique Boolean function on N variables through the function \Psi: {\cal L}^N_K \to \Lambda_N. The probability {\cal P}_K that \Psi (f) = \Psi (f'), when f' is obtained through f by a change of one of its K-Boolean functions (b_K: \IZ_2^K \to \IZ_2), and/or connections; is calculated. The leading term of the asymptotic expansion of {\cal P}_K, for N \gg 1, turns out to depend on: the probability to extract the tautology and contradiction Boolean functions, and in the average value of the distribution of probability of the Boolean functions; the other terms decay as {\cal O} (1 / N). In order to accomplish this, a classification of the Boolean functions in terms of what I have called their irreducible degree of connectivity is established. The mathematical findings are discussed in the biological context where, \Psi is used to model the genotype-phenotype map.Comment: 17 pages, 1 figure, Accepted in Journal of Mathematical Physic

Decontextualizing contextual inversion

Contextual inversion, introduced as an analytical tool by David Lewin, is a concept of wide reach and value in music theory and analysis, at the root of neo-Riemannian theory as well as serial theory, and useful for a range of analytical applications. A shortcoming of contextual inversion as it is currently understood, however, is, as implied by the name, that the transformation has to be defined anew for each application. This is potentially a virtue, requiring the analyst to invest the transformational system with meaning in order to construct it in the first place. However, there are certainly instances where new transformational systems are continually redefined for essentially the same purposes. This paper explores some of the most common theoretical bases for contextual inversion groups and considers possible definitions of inversion operators that can apply across set class types, effectively decontextualizing contextual inversions.Accepted manuscrip

A search for X-ray pulsations from the galactic center

Data from the SAS-3 satellite were used in a search for X-ray pulsations from the direction of the galactic center. No periodic X-ray behavior was detected in the frequency interval 0.6 Hz to 0.0006 Hz and energy range 2.5 - 35 keV. For periods less than 60 sec, the upper limit to the amplitude of any pulsation in the 2.5 - 10 keV band is approximately .0017 cts/sq cm/s. This corresponds to a pulsed fraction of approximately 1.3 percent of the total GCX flux. Somewhat higher limits apply for longer periods and for energies greater than 10 keV

Smart Materials as Intelligent Insulation

In order to provide a robust infrastructure for the transmission and distribution of electrical power, understanding and monitoring equipment ageing and failure is of paramount importance. Commonly, failure is associated with degradation of the dielectric material; therefore the introduction of a smart moiety into the material is a potentially attractive means of continual condition monitoring. It is important that any introduction of smart groups into the dielectric does not have any detrimental effect on the desirable electrical and mechanical properties of the bulk material. Initial work focussed on the introduction of fluorophores into a model dielectric system. Fluorescence is known to be a visible effect even at very low concentrations of active fluorophores and therefore was thought well suited to such an application. It was necessary both to optimise the active fluorophore itself and to determine the most appropriate manner in which to introduce the fluorophores into the insulating system. This presentation will describe the effect of introducing fluorophores into polymeric systems on the dielectric properties of the material and the findings thus far [1]. Alternative smart material systems will also be discussed along with the benefits and limitations of smart materials as electric field sensors