Potential Therapeutic Effects of Meditation for Treating Affective Dysregulation.

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Developing a platform of environmental omics for the green-lipped mussel Perna viridis

Session Track: Aquatic and terrestrial ecotoxicologyOral presentationConference Theme: Science across bridges, borders and boundariesThe green-lipped mussel Perna viridis is an important marine biomonitor species in pollution monitoring and ecotoxicological studies in Asia-Pacific region, and considered as a subtropical equivalent biomonitor of the temperate Mytilus species. However, the genomic information of P. viridis is still largely unexplored when compared with Mytilus species. This study aimed to establish a transcriptomic profile of P. viridis using the next generation sequencing technology and provide a good representative set of genomic information for elucidation of toxic mechanisms upon pollution stresses and identification of a suite of suitable biomarkers for monitoring marine pollution and environmental stresses. To obtain a wide spectrum of environmental-associated transcripts, adult mussels (4-5 cm shell length) were collected from different locations in Hong Kong and from those after 24-hour exposures to various challenges of physical stresses and chemical pollutants, so as to cover a wide range of stress-associated transcription patterns for future environmental studies. Two males and females from each location and from each treatment were chosen for obtaining the three target tissues (i.e., hepatopancreas, gill and adductor muscle). For each sex and each tissue type, a total RNA sample was extracted from pooled tissues from the field and laboratory treated mussels. The RNA sample was subjected to cDNA library construction, followed by the RNA-sequencing using a Solexa GAIIx (Illumina). Including the splicing variants, a de novo assembly of a total length of 295,064,579 base-pair (bp) contig was obtained, with 233,257 contigs assembled of an average size of 1264 bp. The 192,879 non-redundant assembled transcripts were blasted against the NCBI nr database and three molluscan EST databases, and resulted in 44,713 transcripts with at least a blast hit, and having a top match with the sequences from the Pacific oyster, Crassostrea gigas (27,651 transcripts). A total of 5,131 transcripts were assigned with KEGG annotation involving in 329 pathways. Based on multivariate statistical analysis, expression patterns of genes from stress associated responses and detoxification were strongly tissue-specific but the differences between genders were little. The anticipated genomic database generated from this study will further strengthen the role of P. viridis as a universal marine biomonitor in the Asia-Pacific region.published_or_final_versio

Test case selection with and without replacement

Previous theoretical studies on the effectiveness of partition testing and random testing have assumed that test cases are selected with replacement. Although this assumption has been well known to be less realistic, it has still been used in previous theoretical work because it renders the analyses more tractable. This paper presents a theoretical investigation aimed at comparing the effectiveness when test cases are selected with and without replacement, and exploring the relationships between these two scenarios. We propose a new effectiveness metric for software testing, namely the expected number of distinct failures detected, to re-examine existing partition testing strategies.postprin

De novo transcriptome analysis of Perna viridis highlights tissue-specific patterns for environmental studies

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Water extract of Rheum officinale Baill. induces apoptosis in human lung adenocarcinoma A549 and human breast cancer MCF-7 cell lines

Author name used in this publication: De-Jian GuoAuthor name used in this publication: Peter Hoi-Fu Yu2009-2010 > Academic research: refereed > Publication in refereed journalAccepted ManuscriptPublishe

Cervical dysplasia in patients with systemic lupus erythematosus

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De novo transcriptome analysis for mechanistic study of organotin-mediated endocrine disruption in Reishia Clavigera

Poster presentation: P-63Human ImpactsMany endocrine disrupting compounds are bioaccumulative and toxic to a wide range of marine organisms, leading to reproductive impairment, development of cancer and abnormal metabolism. For instance, organotin compounds (OTs) such as tributyltin and triphenyltin can induce the development of imposex (i.e., superimposition of male sexual organs) in females of over 200 gastropod species. OTs have been widely used as biocides in antifouling paints and industrial applications. Thus they have been released into the marine environment, posing risks to non-target marine organisms and human health. Although many studies have been conducted to ...postprin

Large-eddy simulatoin of flow field and pollutant dispession in urban street canyons under unstable atmospheric

Thermal stratification plays an important role in the air flow and pollutant dispersion processes. This study employed a large-eddy simulation (LES) code based on a one-equation subgrid-scale (SGS) model to investigate the flow field and pollutant dispersion characteristics inside urban street canyons. The unstable thermal stratification was simulated by heating the ground level of the street canyons. The thermal buoyancy forces were, using the Boussinesq assumption, taken into account in both the Navier-Stokes equations and the transport equation for SGS turbulent kinetic energy (TKE). The LES had been validated against experimental data obtained in wind tunnel studies before it was applied to study the detailed turbulence and pollutant dispersion characteristics in urban street canyons. The effects of different bulk Richardson number (Rb) were investigated. Several typical temperature differences between the street bottom and ambient air were configured to simulate the scenarios occurring at different times during the day.postprintThe 7th International Conference of Urban Climate (ICUC-7), Yokohama, Japan, 29 June-3 July 2009

Neural Plastic Effects of Cognitive Training on Aging Brain.

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Prenatal Detection of Aneuploidy and Imbalanced Chromosomal Arrangements by Massively Parallel Sequencing

Fetal chromosomal abnormalities are the most common reasons for invasive prenatal testing. Currently, G-band karyotyping and several molecular genetic methods have been established for diagnosis of chromosomal abnormalities. Although these testing methods are highly reliable, the major limitation remains restricted resolutions or can only achieve limited coverage on the human genome at one time. The massively parallel sequencing (MPS) technologies which can reach single base pair resolution allows detection of genome-wide intragenic deletions and duplication challenging karyotyping and microarrays as the tool for prenatal diagnosis. Here we reported a novel and robust MPS-based method to detect aneuploidy and imbalanced chromosomal arrangements in amniotic fluid (AF) samples. We sequenced 62 AF samples on Illumina GAIIx platform and with averagely 0.01× whole genome sequencing data we detected 13 samples with numerical chromosomal abnormalities by z-test. With up to 2× whole genome sequencing data we were able to detect microdeletion/microduplication (ranged from 1.4 Mb to 37.3 Mb of 5 samples from chorionic villus sampling (CVS) using SeqSeq algorithm. Our work demonstrated MPS is a robust and accurate approach to detect aneuploidy and imbalanced chromosomal arrangements in prenatal samples