CTX ϕ cluster analysis of <i>Vibrio cholerae</i> O1 El Tor Ogawa isolated during cholera outbreaks in Mozambique from 2012 to 2015.

<p>Showing a classic signature of <i>Vibrio cholerae</i> O1 El Tor variants B33 and CIRS 101. AMP- Ampicillin; TE-Tetracycline; NA- Nalidixic Acid; C-Chloramphenicol; CIP-Ciprofloxacin; SXT- Sulphamethoxazol-trimethropim; F- Nitrofurantoin; AZM- Azithromycin; rstR, ctxB and tcpA- <i>Vibrio cholerae</i> virulence genes; TLC-RS1, CORE-RTX and TCL-RS2—primers for the presence of CTX ϕ on chromosome 1; Chr II—Chromosome 2.</p

AST per district and per year, for <i>V</i>. <i>cholerae</i> O1 El Tor Ogawa isolated during cholera outbreaks in Mozambique from 2012 to 2015.

<p>In 2012 (Cuamba district in Niassa province and Montepuez <i>district</i> in Cabo Delgado province), 2013 (Cuamba district in Niassa province, Pemba city and Montepuez <i>districts</i> in Cabo Delgado province, Nampula city <i>district</i> in Nampula province and Alto-Molócue <i>district</i> in Zambezia province), 2014 (Nampula city <i>district</i> in Nampula province), 2015 (Lichinga city, Lago and Cuamba <i>districts</i> in Niassa province, Nampula city <i>district</i> in Nampula province and Morrumbala and Quelimane city <i>districts</i> in Zambézia province, Tete city and Moatize <i>districts</i> in Tete province, Beira city <i>district</i> in Sofala province and Matola city <i>district</i> in Maputo province). AMP- Ampicillin; TE-Tetracycline; NA- Nalidixic Acid; C-Chloramphenicol; CIP-Ciprofloxacin; SXT- Sulphamethoxazol-trimethropim; F- Nitrofurantoin; AZM- Azithromycin; rstR, ctxB and tcpA- <i>Vibrio cholerae</i> virulence genes; TLC-RS1, CORE-RTX and TCL-RS2—primers for the presence of CTX ϕ on chromosome 1; Chr II—Chromosome 2</p