Improving Term Frequency Normalization for Multi-topical Documents, and Application to Language Modeling Approaches

Term frequency normalization is a serious issue since lengths of documents are various. Generally, documents become long due to two different reasons - verbosity and multi-topicality. First, verbosity means that the same topic is repeatedly mentioned by terms related to the topic, so that term frequency is more increased than the well-summarized one. Second, multi-topicality indicates that a document has a broad discussion of multi-topics, rather than single topic. Although these document characteristics should be differently handled, all previous methods of term frequency normalization have ignored these differences and have used a simplified length-driven approach which decreases the term frequency by only the length of a document, causing an unreasonable penalization. To attack this problem, we propose a novel TF normalization method which is a type of partially-axiomatic approach. We first formulate two formal constraints that the retrieval model should satisfy for documents having verbose and multi-topicality characteristic, respectively. Then, we modify language modeling approaches to better satisfy these two constraints, and derive novel smoothing methods. Experimental results show that the proposed method increases significantly the precision for keyword queries, and substantially improves MAP (Mean Average Precision) for verbose queries.Comment: 8 pages, conference paper, published in ECIR '0

Dual priming oligonucleotide system for the multiplex detection of respiratory viruses and SNP genotyping of CYP2C19 gene

Successful PCR starts with proper priming between an oligonucleotide primer and the template DNA. However, the inevitable risk of mismatched priming cannot be avoided in the currently used primer system, even though considerable time and effort are devoted to primer design and optimization of reaction conditions. Here, we report a novel dual priming oligonucleotide (DPO) which contains two separate priming regions joined by a polydeoxyinosine linker. The linker assumes a bubble-like structure which itself is not involved in priming, but rather delineates the boundary between the two parts of the primer. This structure results in two primer segments with distinct annealing properties: a longer 5′-segment that initiates stable priming, and a short 3′-segment that determines target-specific extension. This DPO-based system is a fundamental tool for blocking extension of non-specifically primed templates, and thereby generates consistently high PCR specificity even under less than optimal PCR conditions. The strength and utility of the DPO system are demonstrated here using multiplex PCR and SNP genotyping PCR

Molecular-Beam Spectroscopy with an Infinite Interferometer: Spectroscopic Resolution and Accuracy

An interferometer with effectively infinite maximum optical path difference removes the dominant resolution limitation for interferometric spectroscopy. We present mass-correlated rotational Raman spectra that represent the world's highest resolution scanned interferometric data and discuss the current and expected future limitations in achievable spectroscopic performance.Comment: 8 pages, 12 figures, 1 table, submitted to the Journal of the Korean Physical Societ

Cupping for Treating Pain: A Systematic Review

The objective of this study was to assess the evidence for or against the effectiveness of cupping as a treatment option for pain. Fourteen databases were searched. Randomized clinical trials (RCTs) testing cupping in patients with pain of any origin were considered. Trials using cupping with or without drawing blood were included, while trials comparing cupping with other treatments of unproven efficacy were excluded. Trials with cupping as concomitant treatment together with other treatments of unproven efficacy were excluded. Trials were also excluded if pain was not a central symptom of the condition. The selection of studies, data extraction and validation were performed independently by three reviewers. Seven RCTs met all the inclusion criteria. Two RCTs suggested significant pain reduction for cupping in low back pain compared with usual care (P < .01) and analgesia (P < .001). Another two RCTs also showed positive effects of cupping in cancer pain (P < .05) and trigeminal neuralgia (P < .01) compared with anticancer drugs and analgesics, respectively. Two RCTs reported favorable effects of cupping on pain in brachialgia compared with usual care (P = .03) or heat pad (P < .001). The other RCT failed to show superior effects of cupping on pain in herpes zoster compared with anti-viral medication (P = .065). Currently there are few RCTs testing the effectiveness of cupping in the management of pain. Most of the existing trials are of poor quality. Therefore, more rigorous studies are required before the effectiveness of cupping for the treatment of pain can be determined

Guards and Culprits in the Endoplasmic Reticulum: Glucolipotoxicity and β-Cell Failure in Type II Diabetes

The endoplasmic reticulum (ER) is a cellular organelle responsible for multiple important cellular functions including the biosynthesis and folding of newly synthesized proteins destined for secretion, such as insulin. The ER participates in all branches of metabolism, linking nutrient sensing to cellular signaling. Many pathological and physiological factors perturb ER function and induce ER stress. ER stress triggers an adaptive signaling cascade, called the unfolded protein response (UPR), to relieve the stress. The failure of the UPR to resolve ER stress leads to pathological conditions such as β-cell dysfunction and death, and type II diabetes. However, much less is known about the fine details of the control and regulation of the ER response to hyperglycemia (glucotoxicity), hyperlipidemia (lipotoxicity), and the combination of both (glucolipotoxicity). This paper considers recent insights into how the response is regulated, which may provide clues into the mechanism of ER stress-mediated β-cell dysfunction and death during the progression of glucolipotoxicity-induced type II diabetes

Optical Spectroscopy of Supernova Remnants in M81 and M82

We present spectroscopy of 28 SNR candidates as well as one H II region in M81, and two SNR candidates in M82. Twenty six out of the M81 candidates turn out to be genuine SNRs, and two in M82 may be shocked condensations in the galactic outflow or SNRs. The distribution of [N II]/H{\alpha} ratios of M81 SNRs is bimodal. M81 SNRs are divided into two groups in the spectral line ratio diagrams: an [O III]-strong group and an [O III]-weak group. The latter have larger sizes, and may have faster shock velocity. [N II]/H{\alpha} ratios of the SNRs show a strong correlation with [S II]/H{\alpha} ratios. They show a clear radial gradient in [N II]/H{\alpha} and [S II]/H{\alpha} ratios: dLog ([N II]/H{\alpha})/dLog R = -0.018 {\pm} 0.008 dex/kpc and dLog ([S II]/H{\alpha})/dLog R = -0.016 {\pm} 0.008 dex/kpc where R is a deprojected galactocentric distance. We estimate the nitrogen and oxygen abundance of the SNRs from the comparison with shock-ionization models. We obtain a value for the nitrogen radial gradient, dLog(N/H)/dLogR = -0.023 {\pm} 0.009 dex/kpc, and little evidence for the gradient in oxygen. This nitrogen abundance shows a few times flatter gradient than those of the planetary nebulae and H II regions. We find that five SNRs are matched with X-ray sources. Their X-ray hardness colors are consistent with thermal SNRs.Comment: 19 pages, 24 figures, 5 tables, ApJ accepte

Refining Historical earthquake Data Through Modeling and Scale Model Tests

This study was performed for the reevaluation of historical earthquake records which occurred in Korea through tests and numerical analyses. For the scale model tests, static and cyclic lateral load tests on wooden frames that constitute a Korean ancient commoner’s house were conducted. Full-scale models of two types of frames were used for testing. Two 1:4 scale models were tested for rock and soil foundation conditions. Scaled real earthquake time histories were inputted for the tests. The peak ground acceleration (PGA) at the collapse of the house at the soil site was 0.25g, whereas PGA for moderate damage at the rock site was 0.6g. The intensity of major historical earthquake records related with house collapses was reevaluated based on the results of these scale mode1 tests. The magnitudes of historical earthquake records related with house collapses were estimated considering the magnitude, epicentral distance, soil condition and aging of the house. Eighteen artificial time histories for magnitudes 6-8, epicentral distances 5 km - 350 km and hard and soft soil condition were generated. The aging effects of the house was modeled as the lateral loading capacity of wooden frames represented by hysteretic stiffness decreased linearly with time

Evaluation of Compressive Strength and Stiffness of Grouted Soils by Using Elastic Waves

Cement grouted soils, which consist of particulate soil media and cementation agents, have been widely used for the improvement of the strength and stiffness of weak ground and for the prevention of the leakage of ground water. The strength, elastic modulus, and Poisson’s ratio of grouted soils have been determined by classical destructive methods. However, the performance of grouted soils depends on several parameters such as the distribution of particle size of the particulate soil media, grouting pressure, curing time, curing method, and ground water flow. In this study, elastic wave velocities are used to estimate the strength and elastic modulus, which are generally obtained by classical strength tests. Nondestructive tests by using elastic waves at small strain are conducted before and during classical strength tests at large strain. The test results are compared to identify correlations between the elastic wave velocity measured at small strain and strength and stiffness measured at large strain. The test results show that the strength and stiffness have exponential relationship with elastic wave velocities. This study demonstrates that nondestructive methods by using elastic waves may significantly improve the strength and stiffness evaluation processes of grouted soils