Degree-degree Correlated Low-density Parity-check Codes Over a Binary Erasure Channel

Most existing works on analyzing the performance of a random ensemble of low-density parity-check (LDPC) codes assume that the degree distributions of the two ends of a randomly selected edge are independent. In the paper, we take one step further and consider ensembles of LDPC codes with degree-degree correlations. For this, we propose two methods to construct an ensemble of degree-degree correlated LDPC codes. We then derive a system of density evolution equations for such degree-degree correlated LDPC codes over a binary erasure channel (BEC). By conducting extensive numerical experiments, we show how the degree-degree correlation affects the performance of LDPC codes. Our numerical results show that LDPC codes with negative degree-degree correlation could improve the maximum tolerable erasure probability. Moreover, increasing the negative degree-degree correlation could lead to better unequal error protection (UEP) design.Comment: accepted by the 2023 IEEE International Symposium on Information Theory (ISIT

A Reinforcement Learning Approach for the Multichannel Rendezvous Problem

In this paper, we consider the multichannel rendezvous problem in cognitive radio networks (CRNs) where the probability that two users hopping on the same channel have a successful rendezvous is a function of channel states. The channel states are modelled by two-state Markov chains that have a good state and a bad state. These channel states are not observable by the users. For such a multichannel rendezvous problem, we are interested in finding the optimal policy to minimize the expected time-to-rendezvous (ETTR) among the class of {\em dynamic blind rendezvous policies}, i.e., at the $t^{th}$ time slot each user selects channel $i$ independently with probability $p_i(t)$, $i=1,2, \ldots, N$. By formulating such a multichannel rendezvous problem as an adversarial bandit problem, we propose using a reinforcement learning approach to learn the channel selection probabilities $p_i(t)$, $i=1,2, \ldots, N$. Our experimental results show that the reinforcement learning approach is very effective and yields comparable ETTRs when comparing to various approximation policies in the literature.Comment: 5 pages, 9 figures. arXiv admin note: text overlap with arXiv:1906.1042

Spontaneous Arrangement of Two-way Flow in Water Bridge

By revisiting the century-old problem of water bridge, we demonstrate that it is in fact dynamic and comprises of two coaxial currents that carry different charges and flow in opposite directions. Initially, the inner flow is facilitated by the cone jet that is powered by H+ and flows out of the anode beaker. The negative cone jet from cathode is established later and forced to take the outer route. This spontaneous arrangement of two-way flow is revealed by the use of chemical dyes, e.g., fluorescein and FeCl3, carbon powder, and the Particle Image Velocimetry. These two opposing flows are found to carry non-equal flux that results in a net transport of water to the cathode beaker. By combining the above information and taking into account the counter flow to equate the water level from the connecting pipe, we can estimate the cross section and flow speed of these co-axial flows as a function of time and applied voltage.Comment: 5 pages, 5 figure

Cyberbullying Detection on Social Network Services

Social networks such as Facebook or Twitter promote the communication between people but they also lead to some excessive uses on the Internet such as cyberbullying for malicious users. In addition, the accessibility of the social network also allows cyberbullying to occur at anytime and evoke more harm from other users’ dissemination. This study collects cyberbullying cases in Twitter and attempts to establish an auto-detection model of cyberbullying tweets base on the text, readability, sentiment score, and other user information to predict the tweets with harassment and ridicule cyberbullying tweets. The novelty of this study is using the readability analysis that has not been considered in past studies to reflect the author\u27s education level, age, and social status. Three data mining techniques, k-nearest neighbors, support vector machine, and decision tree are used in this study to detect the cyberbullying tweets and select the best performance model for cyberbullying prediction

Atomically-thin metallic Si and Ge allotropes with high Fermi velocities

Silicon and germanium are the well-known materials used to manufacture electronic devices for the integrated circuits but they themselves are not considered as promising options for interconnecting the devices due to their semiconducting nature. We have discovered that both Si and Ge atoms can form unexpected metallic monolayer structures which are more stable than the extensively studied semimetallic silicene and germanene, respectively. More importantly, the newly discovered two-dimensional allotropes of Si and Ge have Fermi velocities superior to the Dirac fermions in graphene, indicating that the metal wires needed in the silicon-based integrated circuits can be made of Si atom itself without incompatibility, allowing for all-silicon-based integrated circuits.Comment: 10 pages, 3 figures, 1 tabl

Granzyme G is expressed in the two-cell stage mouse embryo and is required for the maternal-zygotic transition

<p>Abstract</p> <p>Background</p> <p>Detailed knowledge of the molecular and cellular mechanisms that direct spatial and temporal gene expression in pre-implantation embryos is critical for understanding the control of the maternal-zygotic transition and cell differentiation in early embryonic development. In this study, twenty-three clones, expressed at different stages of early mouse development, were identified using differential display reverse transcription polymerase chain reaction (DDRT-PCR). One of these clones, which is expressed in 2-cell stage embryos at 48 hr post-hCG injection, shows a perfect sequence homology to the gene encoding the granzyme G protein. The granzyme family members are serine proteases that are present in the secretory granules of cytolytic T lymphocytes. However, the pattern of granzyme G expression and its function in early mouse embryos are entirely unknown.</p> <p>Results</p> <p>Upon the introduction of an antisense morpholino (2 mM) against granzyme G to knock-down endogenous gene function, all embryos were arrested at the 2- to 4-cell stages of egg cleavage, and the <it>de novo </it>synthesis of zygotic RNAs was decreased. The embryonic survival rate was dramatically decreased at the late 2-cell stage when serine protease-specific inhibitors, 0.1 mM 3,4-dichloroisocoumarin (3,4-DCI), and 2 mM phenyl methanesulphonyl fluoride (PMSF), were added to the <it>in vitro </it>embryonic culture medium. Survival was not affected by the addition of 0.5 mM EDTA, a metalloproteinase inhibitor.</p> <p>Conclusion</p> <p>We characterized for the first time the expression and function of <it>granzyme G </it>during early stage embryogenesis. Our data suggest that granzyme G is an important factor in early mouse embryonic development and may play a novel role in the elimination of maternal proteins and the triggering of zygotic gene expression during the maternal-zygotic transition.</p

The incidence and risk of developing a second primary esophageal cancer in patients with oral and pharyngeal carcinoma: a population-based study in Taiwan over a 25 year period

<p>Abstract</p> <p>Background</p> <p>The incidence of oral and pharyngeal (including oral cavity, oropharynx and hypopharynx) carcinoma increases rapidly in Asia and South Pacific because of betel quid chewing. Thus far, large-scale epidemiological studies are not available yet to stratify these patients by their risks of developing a second primary cancer in the digestive tract including esophagus, stomach, colon, and rectum.</p> <p>Methods</p> <p>A population-based study was conducted using the database from the Taiwan National Cancer Registry for the period 1979-2003. We quantified standardized incidence ratios (SIRs) and cumulative incidence of second primary cancers among 33,787 patients with initial diagnoses of oral and pharyngeal carcinoma.</p> <p>Results</p> <p>Among these four digestive tract organs, the esophagus was the only site of second cancer with excess risk in patients with oral and pharyngeal carcinoma. The incidence and risk of developing a second primary esophageal cancer differed by the site of the primary index tumor, most frequently seen in hypopharyngeal cancer (71/4,218 = 1.68%, SIR = 22.76, 95% CI 17.77-28.70), followed by oropharyngeal cancer (30/3,403 = 0.88%, SIR = 14.29, 95% CI 9.64-20.39) and the least in oral cavity cancer (99/26,166 = 0.38%, SIR = 5.57, 95% CI 4.53-6.78). In addition, the risk was extraordinarily high for patients with a follow-up interval ≤ 1 year and those with first primary cancer diagnosed at age ≤50. These patients may justify more close surveillance.</p> <p>Conclusion</p> <p>The present study represents the first population-based study in Asia attempting to stratify the patients of oral and pharyngeal carcinoma by their risk of developing a second esophageal cancer. It helps identify patients at high risk and tailor the application of intense follow-up surveillance to the estimated risk in each individual case.</p

Glial Nrf2 signaling mediates the neuroprotection exerted by Gastrodia elata Blume in Lrrk2-G2019S Parkinson's disease.

The most frequent missense mutations in familial Parkinson's disease (PD) occur in the highly conserved LRRK2/PARK8 gene with G2019S mutation. We previously established a fly model of PD carrying the LRRK2-G2019S mutation that exhibited the parkinsonism-like phenotypes. An herbal medicine, Gastrodia elata Blume (GE), has been reported to have neuroprotective effects in toxin-induced PD models. However, the underpinning molecular mechanisms of GE beneficiary to G2019S-induced PD remain unclear. Here, we show that these G2019S flies treated with water extracts of GE (WGE) and its bioactive compounds, gastrodin and 4-HBA, displayed locomotion improvement and dopaminergic neuron protection. WGE suppressed the accumulation and hyperactivation of G2019S proteins in dopaminergic neurons and activated the antioxidation and detoxification factor Nrf2 mostly in the astrocyte-like and ensheathing glia. Glial activation of Nrf2 antagonizes G2019S-induced Mad/Smad signaling. Moreover, we treated LRRK2-G2019S transgenic mice with WGE and found that the locomotion declines, the loss of dopaminergic neurons, and the number of hyperactive microglia were restored. WGE also suppressed the hyperactivation of G2019S proteins and regulated the Smad2/3 pathways in the mice brains. We conclude that WGE prevents locomotion defects and the neuronal loss induced by G2019S mutation via glial Nrf2/Mad signaling, unveiling a potential therapeutic avenue for PD

NBM-HD-1: A Novel Histone Deacetylase Inhibitor with Anticancer Activity

HDAC inhibitors (HDACis) have been developed as promising anticancer agents in recent years. In this study, we synthesized and characterized a novel HDACi, termed NBM-HD-1. This agent was derived from the semisynthesis of propolin G, isolated from Taiwanese green propolis (TGP), and was shown to be a potent suppressor of tumor cell growth in human breast cancer cells (MCF-7 and MDA-MB-231) and rat glioma cells (C6), with an IC50 ranging from 8.5 to 10.3 μM. Western blot demonstrated that levels of p21(Waf1/Cip1), gelsolin, Ac-histone 4, and Ac-tubulin markedly increased after treatment of cancer cells with NBM-HD-1. After NBM-HD-1 treatment for 1–4 h, p-PTEN and p-AKT levels were markedly decreased. Furthermore, we also found the anticancer activities of NBM-HD-1 in regulating cell cycle regulators. Treatment with NBM-HD-1, p21(Waf1/Cip1) gene expression had markedly increased while cyclin B1 and D1 gene expressions had markedly decreased. On the other hand, we found that NBM-HD-1 increased the expressions of tumor-suppressor gene p53 in a dose-dependent manner. Finally, we showed that NBM-HD-1 exhibited potent antitumor activity in a xenograft model. In conclusion, this study demonstrated that this compound, NBM-HD-1, is a novel and potent HDACi with anticancer activity in vitro and in vivo