42 research outputs found
Atomic-scale structure of the SrTiO3(001)-c(6x2) reconstruction: Experiments and first-principles calculations
The c(6x2) is a reconstruction of the SrTiO3(001) surface that is formed
between 1050-1100oC in oxidizing annealing conditions. This work proposes a
model for the atomic structure for the c(6x2) obtained through a combination of
results from transmission electron diffraction, surface x-ray diffraction,
direct methods analysis, computational combinational screening, and density
functional theory. As it is formed at high temperatures, the surface is complex
and can be described as a short-range ordered phase featuring microscopic
domains composed of four main structural motifs. Additionally, non-periodic
TiO2 units are present on the surface. Simulated scanning tunneling microscopy
images based on the electronic structure calculations are consistent with
experimental images
Understanding how the V(D)J recombinase catalyzes transesterification: distinctions between DNA cleavage and transposition
The Rag1 and Rag2 proteins initiate V(D)J recombination by introducing site-specific DNA double-strand breaks. Cleavage occurs by nicking one DNA strand, followed by a one-step transesterification reaction that forms a DNA hairpin structure. A similar reaction allows Rag transposition, in which the 3ā²-OH groups produced by Rag cleavage are joined to target DNA. The Rag1 active site DDE triad clearly plays a catalytic role in both cleavage and transposition, but no other residues in Rag1 responsible for transesterification have been identified. Furthermore, although Rag2 is essential for both cleavage and transposition, the nature of its involvement is unknown. Here, we identify basic amino acids in the catalytic core of Rag1 specifically important for transesterification. We also show that some Rag1 mutants with severe defects in hairpin formation nonetheless catalyze substantial levels of transposition. Lastly, we show that a catalytically defective Rag2 mutant is impaired in target capture and displays a novel form of coding flank sensitivity. These findings provide the first identification of components of Rag1 that are specifically required for transesterification and suggest an unexpected role for Rag2 in DNA cleavage and transposition
Direct methods determination of the Si(111)-(6x6)Au surface structure
The atomic structure of the Au 6Ć6 on Si(111) phase has been determined using direct methods and surface X-ray diffraction data. This surface structure is very complicated, with 14 independent gold atoms, relaxations in 24 independent silicon sites and three partially occupied gold sites. In one sense the structure can be described as microdomains of the parent 3Ć3 Au on Si(111) structure. A better description is in terms of a tiling of incomplete pentagonal and trimer units, essentially a pseudo-pentagonal glass. In terms of these structural units it is possible to explain all the gold structures in the coverage range 0.8ā1.5 monolayers as pseudo-glasses with strong short-range order but varying degrees of long-range order
In situ proteome profiling of C75, a covalent bioactive compound with potential anticancer activities
10.1021/ol500206wOrganic Letters1651414-1417ORLE