131 research outputs found
Rumor Identification with Maximum Entropy in MicroNet
The widely used applications of Microblog, WeChat, and other social networking platforms (that we call MicroNet) shorten the period of information dissemination and expand the range of information dissemination, which allows rumors to cause greater harm and have more influence. A hot topic in the information dissemination field is how to identify and block rumors. Based on the maximum entropy model, this paper constructs the recognition mechanism of rumor information in the micronetwork environment. First, based on the information entropy theory, we obtained the characteristics of rumor information using the maximum entropy model. Next, we optimized the original classifier training set and the feature function to divide the information into rumors and nonrumors. Finally, the experimental simulation results show that the rumor identification results using this method are better than the original classifier and other related classification methods
Serum IL-38 levels in patients with type 2 diabetes mellitus
Introduction: Interleukin 38 (IL-38) is a new member of the IL-1 family, and it has anti-inflammatory activity. However, its role in type 2 diabetes mellitus (T2DM) has not been reported.
Material and methods: The study included 40 T2DM patients and 42 healthy control subjects. The anthropometric and biochemical measurements were performed using an automatic biochemical analyser, high-performance liquid chromatography, and electrochemiluminescence immunoassay. Circulating IL-38 levels were determined by enzyme-linked immunosorbent assay.
Results: Serum IL-38 levels in T2DM patients were significantly lower than those in controls. Correlation analysis showed that serum IL-38 was negatively correlated with systolic blood pressure and interleukin 17 (IL-17).
Conclusions: The results suggest that IL-38 may be a new biomarker of T2DM
Selective Autophagy of BES1 Mediated by DSK2 Balances Plant Growth and Survival
Plants encounter a variety of stresses and must fine-tune their growth and stress-response programs to best suit their environment. BES1 functions as a master regulator in the brassinosteroid (BR) pathway that promotes plant growth. Here, we show that BES1 interacts with the ubiquitin receptor protein DSK2 and is targeted to the autophagy pathway during stress via the interaction of DSK2 with ATG8, a ubiquitin-like protein directing autophagosome formation and cargo recruitment. Additionally, DSK2 is phosphorylated by the GSK3-like kinase BIN2, a negative regulator in the BR pathway. BIN2 phosphorylation of DSK2 flanking its ATG8 interacting motifs (AIMs) promotes DSK2-ATG8 interaction, thereby targeting BES1 for degradation. Accordingly, loss-of-function dsk2 mutants accumulate BES1, have altered global gene expression profiles, and have compromised stress responses. Our results thus reveal that plants coordinate growth and stress responses by integrating BR and autophagy pathways and identify the molecular basis of this crosstalk
Histone Lysine Methyltransferase SDG8 Is Involved in Brassinosteroid-Regulated Gene Expression in Arabidopsis thaliana
Citation: Wang, X., Chen, J., Xie, Z., Liu, S., Nolan, T., Ye, H., et al. (2014). Histone lysine
methyltransferase SDG8 is involved in brassinosteroid- regulated gene expression in
arabidopsis thaliana.The plant steroid hormones, brassinosteroids (BRs), play important roles in plant growth, development and responses to environmental stresses. BRs signal through receptors localized to the plasma membrane and other signaling components to regulate the BES1/BZR1 family of transcription factors, which modulates the expression of 4,000-5,000 genes. How BES1/BZR1 and their interacting proteins function to regulate the large number of genes are not completely understood. Here we report that histone lysine methyltransferase SDG8, implicated in Histone 3 lysine 36 di- and tri-methylation (H3K36me2 and me3), is involved in BR-regulated gene expression. BES1 interacts with SDG8, directly or indirectly through IWS1, a transcription elongation factor involved in BR-regulated gene expression. The knockout mutant sdg8 displays a reduced growth phenotype with compromised BR responses. Global gene expression studies demonstrated that SDG8 plays a major role in BR-regulated gene expression as more than half of BR-regulated genes are differentially affected in sdg8 mutant. A Chromatin Immunoprecipitation (ChIP) experiment showed that H3K36me3 is reduced in BR-regulated genes in the sdg8 mutant. Based on these results, we propose that SDG8 plays an essential role in mediating BR-regulated gene expression. Our results thus reveal a major mechanism by which histone modifications dictate hormonal regulation of gene
expression
A (conditional) role for labdane-related diterpenoid natural products in rice stomatal closure
• Rice (Oryza sativa) is the staple food for over half the world’s population. Drought stress imposes major constraints on rice yields. Intriguingly, labdane-related diterpenoid (LRD) phytoalexins in maize (Zea mays) affect drought tolerance, as indicated by the increased susceptibility of an insertion mutant of the class II diterpene cyclase ZmCPS2/An2 that initiates such biosynthesis. Rice also produces LRD phytoalexins, utilizing OsCPS2 and OsCPS4 to initiate a complex metabolic network.
• For genetic studies of rice LRD biosynthesis the fast-growing Kitaake cultivar was selected for targeted mutagenesis via CRISPR/Cas9, with an initial focus on OsCPS2 and OsCPS4. The resulting cps2 and cps4 knockout lines were further crossed to create a cps2x4 double mutant. Both CPSs also
were overexpressed.
• Strikingly, all of the cv Kitaake cps mutants exhibit significantly increased susceptibility to drought, which was associated with reduced stomatal closure that was evident even under well-watered conditions. However, CPS overexpression did not increase drought resistance, and cps mutants in other cultivars did not alter susceptibility to drought, although these also exhibited lesser effects on LRD production.
• The results suggest that LRDs may act as a regulatory switch that triggers stomatal closure in rice, which might reflect the role of these openings in microbial entry.This article is published as Zhang, Juan, Riqing Li, Meimei Xu, Rachel I. Hoffmann, Yushi Zhang, Bo Liu, Mingcai Zhang, Bing Yang, Zhaohu Li, and Reuben J. Peters. "A (conditional) role for labdane‐related diterpenoid natural products in rice stomatal closure." New phytologist 230, no. 2 (2021): 698-709. doi:10.1111/nph.17196. © 2021 The Authors. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited
Rumor Identification with Maximum Entropy in MicroNet
The widely used applications of Microblog, WeChat, and other social networking platforms (that we call MicroNet) shorten the period of information dissemination and expand the range of information dissemination, which allows rumors to cause greater harm and have more influence. A hot topic in the information dissemination field is how to identify and block rumors. Based on the maximum entropy model, this paper constructs the recognition mechanism of rumor information in the micronetwork environment. First, based on the information entropy theory, we obtained the characteristics of rumor information using the maximum entropy model. Next, we optimized the original classifier training set and the feature function to divide the information into rumors and nonrumors. Finally, the experimental simulation results show that the rumor identification results using this method are better than the original classifier and other related classification methods
Role of IL-38 and Its Related Cytokines in Inflammation
Interleukin- (IL-) 38 is a recently discovered cytokine and is the tenth member of the IL-1 cytokine family. IL-38 shares structural features with IL-1 receptor antagonist (IL-1Ra) and IL-36Ra. IL-36R is the specific receptor of IL-38, a partial receptor antagonist of IL-36. IL-38 inhibits the production of T-cell cytokines IL-17 and IL-22. IL-38 also inhibits the production of IL-8 induced by IL-36γ, thus inhibiting inflammatory responses. IL-38-related cytokines, including IL-1Ra and IL-36Ra, are involved in the regulation of inflammation and immune responses. The study of IL-38 and IL-38-related cytokines might provide new insights for developing anti-inflammatory treatments in the near future
Semantic Annotation using Horizontal and Vertical Contexts
Abstract. This paper addresses the issue of semantic annotation using horizontal and vertical contexts. Semantic annotation is a task of annotating web pages with ontological information. Information on a web page is usually two-dimensionally laid out, previous semantic annotation methods that view a web page as an ’object ’ sequence has limitations. In this paper, to better incorporate the two-dimensional contexts, semantic annotation is formalized as a problem of block detection and text annotation. Block detection is aimed at detecting the text block by making use of context in one dimension and text annotation is aimed at detecting the ‘targeted instance ’ in the identified blocks using the other dimensional context. A two-stage method for semantic annotation using machine learning has been proposed. Experimental results indicate that the proposed method can significantly outperform the baseline method as well as the sequence-based method for semantic annotation. 1
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