919 research outputs found
Suitable reference genes for real-time PCR in human HBV-related hepatocellular carcinoma with different clinical prognoses
<p>Abstract</p> <p>Background</p> <p>Housekeeping genes are routinely used as endogenous references to account for experimental differences in gene expression assays. However, recent reports show that they could be de-regulated in different diseases, model animals, or even under varied experimental conditions, which may lead to unreliable results and consequently misinterpretations. This study focused on the selection of suitable reference genes for quantitative PCR in human hepatitis B virus (HBV)-related hepatocellular carcinoma (HCC) with different clinical outcomes.</p> <p>Methods</p> <p>We evaluated 6 commonly used housekeeping genes' expression levels in 108 HBV-related HCCs' matched tumor and non-tomor tissue samples with different clinical outcomes and 26 normal liver specimens by real-time PCR. The expression stability of the 6 genes was compared using the software programs geNorm and NormFinder. To show the impact of reference genes on data analysis, we took PGK1 as a target gene normalized by each reference gene, and performed one-way ANOVA and the equivalence test.</p> <p>Results</p> <p>With the geNorm and NormFinder software programs, analysis of TBP and HPRT1 showed the best stability in all tissue samples, while 18s and ACTB were less stable. When 18s or ACTB was used for normalization, no significant difference of PGK1 expression (p > 0.05) was found among HCC tissues with and without metastasis, and normal liver specimens; however, dramatically differences (p < 0.001) were observed when either TBP or the combination of TBP and HPRT1 were selected as reference genes.</p> <p>Conclusion</p> <p>TBP and HPRT1 are the most reliable reference genes for q-PCR normalization in HBV-related HCC specimens. However, the well-used ACTB and 18S are not suitable, which actually lead to the misinterpretation of the results in gene expression analysis.</p
Suitable reference genes for real-time PCR in human HBV-related hepatocellular carcinoma with different clinical prognoses
<p>Abstract</p> <p>Background</p> <p>Housekeeping genes are routinely used as endogenous references to account for experimental differences in gene expression assays. However, recent reports show that they could be de-regulated in different diseases, model animals, or even under varied experimental conditions, which may lead to unreliable results and consequently misinterpretations. This study focused on the selection of suitable reference genes for quantitative PCR in human hepatitis B virus (HBV)-related hepatocellular carcinoma (HCC) with different clinical outcomes.</p> <p>Methods</p> <p>We evaluated 6 commonly used housekeeping genes' expression levels in 108 HBV-related HCCs' matched tumor and non-tomor tissue samples with different clinical outcomes and 26 normal liver specimens by real-time PCR. The expression stability of the 6 genes was compared using the software programs geNorm and NormFinder. To show the impact of reference genes on data analysis, we took PGK1 as a target gene normalized by each reference gene, and performed one-way ANOVA and the equivalence test.</p> <p>Results</p> <p>With the geNorm and NormFinder software programs, analysis of TBP and HPRT1 showed the best stability in all tissue samples, while 18s and ACTB were less stable. When 18s or ACTB was used for normalization, no significant difference of PGK1 expression (p > 0.05) was found among HCC tissues with and without metastasis, and normal liver specimens; however, dramatically differences (p < 0.001) were observed when either TBP or the combination of TBP and HPRT1 were selected as reference genes.</p> <p>Conclusion</p> <p>TBP and HPRT1 are the most reliable reference genes for q-PCR normalization in HBV-related HCC specimens. However, the well-used ACTB and 18S are not suitable, which actually lead to the misinterpretation of the results in gene expression analysis.</p
Measurement of the proton form factor by studying
Using data samples collected with the BESIII detector at the BEPCII collider,
we measure the Born cross section of at 12
center-of-mass energies from 2232.4 to 3671.0 MeV. The corresponding effective
electromagnetic form factor of the proton is deduced under the assumption that
the electric and magnetic form factors are equal . In
addition, the ratio of electric to magnetic form factors, , and
are extracted by fitting the polar angle distribution of the proton
for the data samples with larger statistics, namely at 2232.4 and
2400.0 MeV and a combined sample at = 3050.0, 3060.0 and 3080.0 MeV,
respectively. The measured cross sections are in agreement with recent results
from BaBar, improving the overall uncertainty by about 30\%. The
ratios are close to unity and consistent with BaBar results in
the same region, which indicates the data are consistent with the
assumption that within uncertainties.Comment: 13 pages, 24 figure
Observation of the state in at BESIII
We report the observation of the in the process with a statistical
significance of , in data samples at center-of-mass energies
4.230, 4.260, 4.360, 4.420 and 4.600~GeV collected with the BESIII
detector at the BEPCII electron positron collider. The measured mass of the
is ~MeV/, where the first error is
statistical and the second systematic, and the width is less than ~MeV at
the 90\% confidence level. The products of the Born cross sections for
and the branching ratio are also measured. These measurements are in good
agreement with the assignment of the as the charmonium
state.Comment: 7 pages, 3 figures, version to appear in Phys. Rev. Let
Search for C-parity violation in and
Using events recorded in
collisions at 3.686 GeV with the BESIII at the BEPCII collider, we
present searches for C-parity violation in and decays via . No significant
signals are observed in either channel. Upper limits on the branching fractions
are set to be and
at the 90\%
confidence level. The former is one order of magnitude more stringent than the
previous upper limit, and the latter represents the first limit on this decay
channel.Comment: 7 pages, 2 figure
Search for the radiative transitions and
By using a 2.92 fb data sample taken at GeV with
the BESIII detector operating at the BEPCII collider, we search for the
radiative transitions and
through the hadronic decays . No
significant excess of signal events above background is observed. We set upper
limits at a 90% confidence level for the product branching fractions to be
and
. Combining our result with world-average
values of , we find the
branching fractions
and at a 90%
confidence level.Comment: 10 pages, 4 figure
Observation of the Dalitz Decay
We report the first observation of the Dalitz decay , based on a data sample of 1.31 billion events collected with
the BESIII detector. The mesons are produced via the decay process. The ratio is measured to be
. This
corresponds to a branching fraction . The transition form
factor is extracted and different expressions are compared to the measured
dependence on the invariant mass. The results are consistent with the
prediction of the Vector Meson Dominance model.Comment: 11 pages,7 figure
Observation of the isospin-violating decay
Using a sample of 1.31 billion events collected with the BESIII
detector at the BEPCII collider, the decays and are
investigated. The isospin violating decay
with , is observed for the first time. The width of the
obtained from the dipion mass spectrum is found to be much smaller
than the world average value. In the mass spectrum, there
is evidence of production. By studying the decay , the branching fractions of and
, as well as their ratio, are also measured.Comment: 10 pages, 10 figures, published in Phys. Rev.
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