Fermion-Spin Transformation to Implement the Charge-Spin Separation

A novel approach, the fermion-spin transformation to implement the charge-spin separation, is developed to study the low-dimensional $t$-$J$ model. In this approach, the charge and spin degrees of freedom of the physical electron are separated, and the charge degree of freedom is represented by a spinless fermion while the spin degree of freedom is represented by a {\it hard-core boson}. The on-site local constraint for single occupancy is satisfied even in the mean-field approximation and the sum rule for the physical electron is obeyed. This approach can be applied to both one and two-dimensional systems. In the one-dimensional case, the spinon as well as the physical electron behaves like Luttinger liquids. We have obtained a gapless charge and spin excitation spectrum, a good ground state energy, and a reasonable electron-momentum distribution within the mean-field approximation. The correct exponents of the correlation functions and momentum distribution are also obtained if the {\it squeezing} effect and rearrangement of the spin configurations are taken into account. In the two-dimensional case, within the mean-field approximation the magnetized flux state with a gap in the spinon spectrum has the lowest energy at half-filling. The antiferromagnetic long-range order is destroyed by hole dopingComment: REVTEX (42 pages, eight figures upon request), International Centre for Theoretical Physics preprint IC/93/354 (accepted for publication in Physical Review B

Analytical solutions to the spin-1 Bose-Einstein condensates

We analytically solve the one-dimensional coupled Gross-Pitaevskii equations which govern the motion of F=1 spinor Bose-Einstein condensates. The nonlinear density-density interactions are decoupled by making use of the unique properties of the Jacobian elliptical functions. Several types of complex stationary solutions are deduced. Furthermore, exact non-stationary solutions to the time-dependent Gross-Pitaevskii equations are constructed by making use of the spin-rotational symmetry of the Hamiltonian. The spin-polarizations exhibit kinked configurations. Our method is applicable to other coupled nonlinear systems.Comment: 12 figure

Convergence of energy-dependent incommensurate antiferromagnetic neutron scattering peaks to commensurate resonance in underdoped bilayer cuprates

The recently discovered coexistence of incommensurate antiferromagnetic neutron scattering peaks and commensurate resonance in underdoped YBa$_2$Cu$_3$O$_{6+x}$ is calling for an explanation. Within the t-J model, the doping and energy dependence of the spin dynamics of the underdoped bilayer cuprates in the normal state is studied based on the fermion-spin theory by considering the bilayer interactions. Incommensurate peaks are found at $[(1\pm\delta)\pi,\pi]$ and $[\pi,(1\pm\delta)\pi]$ at low energies with $\delta$ initially increasing with doping at low dopings and then saturating at higher dopings. These incommensurate peaks are suppressed, and the parameter $\delta$ is reduced with increasing energy. Eventually it converges to the $[\pi,\pi]$ resonance peak. Thus the recently observed coexistence is interpreted in terms of bilayer interactions.Comment: 15 pages, Revtex, five figures are included, accepted for publication in Phys. Rev.

The effects of disorder and interactions on the Anderson transition in doped Graphene

We undertake an exact numerical study of the effects of disorder on the Anderson localization of electronic states in graphene. Analyzing the scaling behaviors of inverse participation ratio and geometrically averaged density of states, we find that Anderson metal-insulator transition can be introduced by the presence of quenched random disorder. In contrast with the conventional picture of localization, four mobility edges can be observed for the honeycomb lattice with specific disorder strength and impurity concentration. Considering the screening effects of interactions on disorder potentials, the experimental findings of the scale enlarges of puddles can be explained by reviewing the effects of both interactions and disorder.Comment: 7 pages, 7 figure

The Potential of Lithotripter Shocbaves for Gene Therapy of TIInlors

Abstract: The shoehwave-induced effects of celI lysis and sonoporation of sumiving cells were investigated for possible application to anti-tumor therapy. Shochw,aves were generated by a system similar to a Domier W-3 Iithotripter. In v;Iro exposures of B 16 melanoma uII sus~nsions containing a DNA reporter plasmid indicated signi fican I transfcction. Results were enhmd by l=ving an W space h the exposure chambers to promote cavitation activity. IJ1\Jivo, plasmids and air were injected into melanoma tumors befo~exposure. 8i@w

Fractalkine/CX3CL1 protects striatal neurons from synergistic morphine and HIV-1 Tat-induced dendritic losses and death

<p>Abstract</p> <p>Background</p> <p>Fractalkine/CX₃CL1 and its cognate receptor CX₃CR1 are abundantly expressed in the CNS. Fractalkine is an unusual C-X3-C motif chemokine that is important in neuron-microglial communication, a co-receptor for HIV infection, and can be neuroprotective. To assess the effects of fractalkine on opiate-HIV interactive neurotoxicity, wild-type murine striatal neurons were co-cultured with mixed glia from the striata of wild-type or <it>Cx3cr1 </it>knockout mice ± HIV-1 Tat and/or morphine. Time-lapse digital images were continuously recorded at 20 min intervals for up to 72 h using computer-aided microscopy to track the same cells repeatedly.</p> <p>Results</p> <p>Co-exposure to Tat and morphine caused synergistic increases in neuron death, dendritic pruning, and microglial motility as previously reported. Exogenous fractalkine prevented synergistic Tat and morphine-induced dendritic losses and neuron death even though the inflammatory mediator TNF-α remained significantly elevated. Antibody blockade of CX₃CR1 mimicked the toxic effects of morphine plus Tat, but did not add to their toxicity; while fractalkine failed to protect wild-type neurons co-cultured with <it>Cx₃cr1</it>^-/--null glia against morphine and Tat toxicity. Exogenous fractalkine also normalized microglial motility, which is elevated by Tat and morphine co-exposure, presumably limiting microglial surveillance that may lead to toxic effects on neurons. Fractalkine immunofluorescence was expressed in neurons and to a lesser extent by other cell types, whereas CX₃CR1 immunoreactivity or GFP fluorescence in cells cultured from the striatum of <it>Cx3cr1</it>^-/-(<it>Cx3cr1</it>^GFP/GFP) mice were associated with microglia. Immunoblotting shows that fractalkine levels were unchanged following Tat and/or morphine exposure and there was no increase in released fractalkine as determined by ELISA. By contrast, CX₃CR1 protein levels were markedly downregulated.</p> <p>Conclusions</p> <p>The results suggest that deficits in fractalkine-CX₃CR1 signaling contribute to the synergistic neurotoxic effects of opioids and Tat. Importantly, exogenous fractalkine can selectively protect neurons from the injurious effects of chronic opioid-HIV-1 Tat co-exposure, and this suggests a potential therapeutic course for neuroAIDS. Although the cellular mechanisms underlying neuroprotection are not certain, findings that exogenous fractalkine reduces microglial motility and fails to protect neurons co-cultured with <it>Cx3cr1</it>^-/-mixed glia suggest that fractalkine may act by interfering with toxic microglial-neuron interactions.</p

Construction of Red Fox Chromosomal Fragments from the Short-Read Genome Assembly

The genome of a red fox (Vulpes vulpes) was recently sequenced and assembled using next-generation sequencing (NGS). The assembly is of high quality, with 94X coverage and a scaffold N50 of 11.8 Mbp, but is split into 676,878 scaffolds, some of which are likely to contain assembly errors. Fragmentation and misassembly hinder accurate gene prediction and downstream analysis such as the identification of loci under selection. Therefore, assembly of the genome into chromosome-scale fragments was an important step towards developing this genomic model. Scaffolds from the assembly were aligned to the dog reference genome and compared to the alignment of an outgroup genome (cat) against the dog to identify syntenic sequences among species. The program Reference-Assisted Chromosome Assembly (RACA) then integrated the comparative alignment with the mapping of the raw sequencing reads generated during assembly against the fox scaffolds. The 128 sequence fragments RACA assembled were compared to the fox meiotic linkage map to guide the construction of 40 chromosomal fragments. This computational approach to assembly was facilitated by prior research in comparative mammalian genomics, and the continued improvement of the red fox genome can in turn offer insight into canid and carnivore chromosome evolution. This assembly is also necessary for advancing genetic research in foxes and other canids

Analysis of 16S rRNA Amplicon Sequencing Options on the Roche/454 Next-Generation Titanium Sequencing Platform

BACKGROUND: 16S rRNA gene pyrosequencing approach has revolutionized studies in microbial ecology. While primer selection and short read length can affect the resulting microbial community profile, little is known about the influence of pyrosequencing methods on the sequencing throughput and the outcome of microbial community analyses. The aim of this study is to compare differences in output, ease, and cost among three different amplicon pyrosequencing methods for the Roche/454 Titanium platform METHODOLOGY/PRINCIPAL FINDINGS: The following three pyrosequencing methods for 16S rRNA genes were selected in this study: Method-1 (standard method) is the recommended method for bi-directional sequencing using the LIB-A kit; Method-2 is a new option designed in this study for unidirectional sequencing with the LIB-A kit; and Method-3 uses the LIB-L kit for unidirectional sequencing. In our comparison among these three methods using 10 different environmental samples, Method-2 and Method-3 produced 1.5-1.6 times more useable reads than the standard method (Method-1), after quality-based trimming, and did not compromise the outcome of microbial community analyses. Specifically, Method-3 is the most cost-effective unidirectional amplicon sequencing method as it provided the most reads and required the least effort in consumables management. CONCLUSIONS: Our findings clearly demonstrated that alternative pyrosequencing methods for 16S rRNA genes could drastically affect sequencing output (e.g. number of reads before and after trimming) but have little effect on the outcomes of microbial community analysis. This finding is important for both researchers and sequencing facilities utilizing 16S rRNA gene pyrosequencing for microbial ecological studies

Minicircle-oriP-IFNγ: A Novel Targeted Gene Therapeutic System for EBV Positive Human Nasopharyngeal Carcinoma

) in which the transgene expression was under the transcriptional regulation of oriP promoter.. Immunohistochemistry was used to detect the expression and the activity of the IFNγ in tumor sections. Our results demonstrated that mc-oriP vectors mediated comparable gene expression and anti-proliferative effect in the EBV-positive NPC cell line C666-1 compared to mc-CMV vectors. Furthermore, mc-oriP vectors exhibited much lower killing effects on EBV-negative cell lines compared to mc-CMV vectors. The targeted expression of mc-oriP vectors was inhibited by EBNA1-siRNA in C666-1. This selective expression was corroborated in EBV-positive and -negative tumor models. as a safe and highly effective targeted gene therapeutic system for the treatment of EBV positive NPC