Additional file 2: of Integrative regression network for genomic association study

mRNA Network Properties. Significantly enriched GO BP terms (top 5) for the largest connected component of integrative regression network of mRNA expressions. (JPEG 282 kb

Additional file 3: of Integrative regression network for genomic association study

Genes With Node Degree 4 and above. This file provides a list of methylation and mRNA genes, those were collected from the highly connected networks (fused) of different cancer profiles. (ZIP 32 kb

Additional file 1: of Identification of epigenetic interactions between miRNA and DNA methylation associated with gene expression as potential prognostic markers in bladder cancer

Supplementary information. Table S1. Significant epigenetic interactions between miRNA and methylation associated with target genes. Table S2. Significant epigenetic interactions between miRNA and methylation associated with target genes for papillary subtype. Table S3. Significant epigenetic interactions between miRNA and methylation associated with target genes for non-papillary subtype. Table S4. Summary of overall survival analysis results. Figure S1. Venn Diagram of Significant target genes for papillary, non-papillary subtypes. Figure S2. Survival analysis between two subgroups (LL and HH). Figure S3. Gene expression boxplot for two subgroups (LL and HH). Figure S4. Gene expression boxplot for four subgroups (LL, LH, HL, and HH). Figure S5. Survival analysis across four subgroups (LL, LH, HL, and HH). (DOCX 2368 kb