Availability of the Pediatric Emergency Care Applied Research Network (PECARN) rule for computed tomography scanning decision in children younger than 2 years with minor head injury

Purpose Traumatic brain injury is the most common cause of pediatric injury. Although computed tomography (CT) scan is an effective modality for screening fatal craniocerebral trauma, there is growing concern about radiation exposure associated with the consequent cancer particularly in children. We assessed validity of previous large prospective study named Pediatric Emergency Care Applied Research Network (PECARN) retrospectively to determine the necessity of CT scans for children younger than 2 years with minor head injury. Methods We reviewed medical records of children younger than 2 years discharged from our emergency department with S00–09 diagnosis code of ICD-10 from August 2008 to December 2014. Patients who had only soft tissue injury without blunt trauma, did not CT scan take brain CT, whose head trauma was not mild, and who was uncertain to meet the rule were excluded. All included patients were divided into the PECARN rule positive group and negative group. Each group was compared by sensitivity, specificity, positive predictive value and negative predictive value to predict four outcomes of clinically important traumatic brain injury (ciTBI), abnormal CT findings, intracranial hemorrhage, and isolated simple skull fracture. Results A total of 1,491 patients were included, 656 PECARN rule positive and 835 negative patients. There is statistical difference between PECARN rule positive and negative the 2 group for ciTBI (P < 0.001), abnormal CT findings (P < 0.001), intracranial hemorrhage (P < 0.001), and isolated simple skull fracture (P < 0.001) with high sensitivity (100.0%, 89.5%, 91.7%,85.7%) and negative predictive value (100.0%, 99.3%, 99.6%, 99.6%). Conclusion We confirmed that PECARN rule is a useful tool to determine the necessity of CT scan and reduce unnecessary CT scan for children younger than 2 years with minor head injury

Human embryonic stem cells express a unique set of microRNAs.

Abstract Human embryonic stem (hES) cells are pluripotent cell lines established from the explanted inner cell mass of human blastocysts. Despite their importance for human embryology and regenerative medicine, studies on hES cells, unlike those on mouse ES (mES) cells, have been hampered by difficulties in culture and by scant knowledge concerning the regulatory mechanism. Recent evidence from plants and animals indicates small RNAs of approximately 22 nucleotides (nt), collectively named microRNAs, play important roles in developmental regulation. Here we describe 36 miRNAs (from 32 stem-loops) identified by cDNA cloning in hES cells. Importantly, most of the newly cloned miRNAs are specifically expressed in hES cells and downregulated during development into embryoid bodies (EBs), while miRNAs previously reported from other human cell types are poorly expressed in hES cells. We further show that some of the ES-specific miRNA genes are highly related to each other, organized as clusters, and transcribed as polycistronic primary transcripts. These miRNA gene families have murine homologues that have similar genomic organizations and expression patterns, suggesting that they may operate key regulatory networks conserved in mammalian pluripotent stem cells. The newly identified hES-specific miRNAs may also serve as molecular markers for the early embryonic stage and for undifferentiated hES cells

Variation block-based genomics method for crop plants

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited.Abstract Background In contrast with wild species, cultivated crop genomes consist of reshuffled recombination blocks, which occurred by crossing and selection processes. Accordingly, recombination block-based genomics analysis can be an effective approach for the screening of target loci for agricultural traits. Results We propose the variation block method, which is a three-step process for recombination block detection and comparison. The first step is to detect variations by comparing the short-read DNA sequences of the cultivar to the reference genome of the target crop. Next, sequence blocks with variation patterns are examined and defined. The boundaries between the variation-containing sequence blocks are regarded as recombination sites. All the assumed recombination sites in the cultivar set are used to split the genomes, and the resulting sequence regions are termed variation blocks. Finally, the genomes are compared using the variation blocks. The variation block method identified recurring recombination blocks accurately and successfully represented block-level diversities in the publicly available genomes of 31 soybean and 23 rice accessions. The practicality of this approach was demonstrated by the identification of a putative locus determining soybean hilum color. Conclusions We suggest that the variation block method is an efficient genomics method for the recombination block-level comparison of crop genomes. We expect that this method will facilitate the development of crop genomics by bringing genomics technologies to the field of crop breeding

The effects of accumulated refractory particles and the peak inert mode temperature on semi-continuous organic carbon and elemental carbon measurements during the CAREBeijing 2006 campaign

Two semi-continuous Sunset carbon analyzers, with different peak inert mode temperatures (615 and 740℃), were simultaneously operated to measure fine particulate organic carbon (OC) and elemental carbon (EC) using a thermal optical transmittance method at an urban site in Beijing, China, from 16 August to 3 September 2006 during the CAREBeijing 2006 campaign. Excellent agreements were obtained between the collocated semi-continuous carbon analyzers, with slopes of 1.02 (R2 = 0.91) for OC and 1.06 (R2 = 0.93) for EC, resulting in very similar average EC/total carbon (TC) ratios of ∼0.36. These results imply that the different peak inert mode (100% helium) temperatures did not cause significant biases on the semi-continuous OC and EC measurements. However, it was found that the EC/TC ratio was greatly influenced by the accumulated refractory particles remaining on a quartz filter (PM refractory). Fresh quartz filters, with low PM refractory loadings, which is defined as a laser correction factor ≥0.94, gave ∼8-10% lower EC/TC ratios than aged quartz filters with high PM refractory loadings. The linear regression slope between EC and optically measured EC (OPT-EC) was much higher with fresh quartz filters (slope = 1.03, R2 = 0.96) than aged quartz filters (slope = 0.89, R2 = 0.95), suggesting the underestimation of EC on fresh quartz filters by ∼15% compared to those measured on aged quartz filters. Authentic standard humic-like substances (HULIS) on the clean quartz filter showed the highest extent of pyrolyzed organic carbon (POC) formation (47.4% in total detected carbon mass), followed by those on the Asian dust loaded quartz filter (37%) and the refractory urban pollutant loaded quartz filter (34.1%), indicating that the Asian dust and refractory urban pollutant reduced the POC formation from the HULIS. Thus, this study suggested that the PM refractory loading plays an important role in the semi-continuous OC and EC measurements by altering the degree of POC formation in the inert atmosphere

Survival Analysis of Orthodontic Micro-Implants: A Retrospective Study on the Effects of Patient-Related Factors on Micro-Implant Success

The purpose of this study was to investigate the effects of patient-related factors such as anteroposterior and vertical skeletal patterns and alveolar bone density on the success rate of micro-implants. Cases of orthodontic micro-implants (n = 404; diameter, 1.6 mm; length, 6 mm) were investigated in 164 patients (127 women, 37 men; mean age, 23.6 ± 5.8 years). Cortical bone thickness and alveolar bone density were measured using diagnostic cone-beam computed tomography to examine their effects on the micro-implant’s survival. Moreover, anteroposterior and vertical facial patterns were considered as independent variables for the success of micro-implants. Marginal survival analysis was performed by analyzing the time from implant placement to the removal of the failed micro-implants, or to the end of treatment for successful micro-implants. Variables including age, sex, implantation side, implantation site, root proximity, and type of loading (immediate vs. delayed) were also assessed. In total, 347 (85.9%) of the 404 micro-implants were successful. The mean loading time was 12.4 ± 4.3 months. Marginal survival analysis showed that the effects of the anteroposterior and vertical facial patterns on the risk of failure were not statistically significant. The factors significantly associated with the micro-implant loading time were cortical bone density, root proximity, and micro-implants replanted in the same site. In conclusion, our findings indicate that anteroposterior and vertical skeletal patterns are not associated with the success of orthodontic micro-implants. Cortical bone density may be associated with the micro-implant’s success

Balamuthia mandrillaris interactions with human brain microvascular endothelial cells in vitro

Balamuthia amoebic encephalitis (BAE) is a serious human disease almost always leading to death. An important step in BAE is amoebae invasion of the bloodstream, followed by their haematogenous spread. Balamuthia mandrillaris entry into the central nervous system most likely occurs at the blood–brain barrier sites. Using human brain microvascular endothelial cells (HBMECs), which constitute the blood–brain barrier, this study determined (i) the ability of B. mandrillaris to bind to HBMECs and (ii) the associated molecular mechanisms. Adhesion assays revealed that B. mandrillaris exhibited greater than 90 % binding to HBMECs in vitro. To determine whether recognition of carbohydrate moieties on the surface of the HBMECs plays a role in B. mandrillaris adherence to the target cells, adhesion assays were performed in the presence of the saccharides mannose, galactose, xylose, glucose and fucose. It was observed that adherence of B. mandrillaris was significantly reduced by galactose, whilst the other saccharides had no effect. Acetone fixation of amoebae, but not of HBMECs, abolished adhesion, suggesting that B. mandrillaris adhesin(s) bind to galactose-containing glycoproteins of HBMECs. B. mandrillaris also bound to microtitre wells coated with galactose–BSA. By affinity chromatography using a galactose–Sepharose column, a galactose-binding protein (GBP) was isolated from detergent extracts of unlabelled amoebae. The isolation of a GBP from cell-surface-biotin-labelled amoebae suggested its membrane association. One-dimensional SDS-PAGE confirmed the proteinaceous nature of the GBP and determined its molecular mass as approximately 100 kDa. This is the first report suggesting the role of a GBP in B. mandrillaris interactions with HBMECs