Numerical Algorithms for Dual Bases of Positive-Dimensional Ideals

An ideal of a local polynomial ring can be described by calculating a standard basis with respect to a local monomial ordering. However standard basis algorithms are not numerically stable. Instead we can describe the ideal numerically by finding the space of dual functionals that annihilate it, reducing the problem to one of linear algebra. There are several known algorithms for finding the truncated dual up to any specified degree, which is useful for describing zero-dimensional ideals. We present a stopping criterion for positive-dimensional cases based on homogenization that guarantees all generators of the initial monomial ideal are found. This has applications for calculating Hilbert functions.Comment: 19 pages, 4 figure

Noetherianity for infinite-dimensional toric varieties

We consider a large class of monomial maps respecting an action of the infinite symmetric group, and prove that the toric ideals arising as their kernels are finitely generated up to symmetry. Our class includes many important examples where Noetherianity was recently proved or conjectured. In particular, our results imply Hillar-Sullivant's Independent Set Theorem and settle several finiteness conjectures due to Aschenbrenner, Martin del Campo, Hillar, and Sullivant. We introduce a matching monoid and show that its monoid ring is Noetherian up to symmetry. Our approach is then to factorize a more general equivariant monomial map into two parts going through this monoid. The kernels of both parts are finitely generated up to symmetry: recent work by Yamaguchi-Ogawa-Takemura on the (generalized) Birkhoff model provides an explicit degree bound for the kernel of the first part, while for the second part the finiteness follows from the Noetherianity of the matching monoid ring.Comment: 20 page

Dimensions of Level-1 Group-Based Phylogenetic Networks

Phylogenetic networks represent evolutionary histories of sets of taxa where horizontal evolution or hybridization has occurred. Placing a Markov model of evolution on a phylogenetic network gives a model that is particularly amenable to algebraic study by representing it as an algebraic variety. In this paper, we give a formula for the dimension of the variety corresponding to a triangle-free level-1 phylogenetic network under a group-based evolutionary model. On our way to this, we give a dimension formula for codimension zero toric fiber products. We conclude by illustrating applications to identifiability

Average Behavior of Minimal Free Resolutions of Monomial Ideals

We describe the typical homological properties of monomial ideals defined by random generating sets. We show that, under mild assumptions, random monomial ideals (RMI's) will almost always have resolutions of maximal length; that is, the projective dimension will almost always be $n$, where $n$ is the number of variables in the polynomial ring. We give a rigorous proof that Cohen-Macaulayness is a "rare" property. We characterize when an RMI is generic/strongly generic, and when it "is Scarf"---in other words, when the algebraic Scarf complex of $M\subset S=k[x_1,\ldots,x_n]$ gives a minimal free resolution of $S/M$. As a result we see that, outside of a very specific ratio of model parameters, RMI's are Scarf only when they are generic. We end with a discussion of the average magnitude of Betti numbers.Comment: Final version, to appear in Proceedings of the AM