Human protein reference database—2006 update

Human Protein Reference Database (HPRD) () was developed to serve as a comprehensive collection of protein features, post-translational modifications (PTMs) and protein–protein interactions. Since the original report, this database has increased to >20 000 proteins entries and has become the largest database for literature-derived protein–protein interactions (>30 000) and PTMs (>8000) for human proteins. We have also introduced several new features in HPRD including: (i) protein isoforms, (ii) enhanced search options, (iii) linking of pathway annotations and (iv) integration of a novel browser, GenProt Viewer (), developed by us that allows integration of genomic and proteomic information. With the continued support and active participation by the biomedical community, we expect HPRD to become a unique source of curated information for the human proteome and spur biomedical discoveries based on integration of genomic, transcriptomic and proteomic data

Linear and Femtosecond Nonlinear Optical Properties of Soluble Pyrrolo[1,2-a] Quinoxalines

We report our results from the investigations of linear and ultrafast nonlinear optical properties of a set of Pyrrolo[1,2-a]quinoxalines. Using the steady state optical techniques and density functional theory calculations the linear optical properties were investigated while the non-resonant ultrafast nonlinear optical properties were studied using the degenerate four-wave mixing technique at a wavelength of 800 nm with 70 fs pulses. The investigated molecules demonstrated large off-resonant second hyperpolarizability () and nonlinear refractive index () values compared to similar molecular moieties with potential application in non-linear optical device applications

Ultrafast excited state dynamics and femtosecond nonlinear optical properties of laser fabricated Au and Ag50Au50 nanoparticles

The localized surface plasmon dynamics of laser ablated gold and gold-silver alloy nanoparticles (NPs) near interband and intraband excitation wavelengths were investigated using femtosecond (fs) transient absorption spectroscopy. Interband excitation with 70 fs laser pulses at a wavelength of 400 nm demonstrated plasmon photo-bleach and a transient absorption in the wings of the bleach spectrum. With intraband excitation, Ag50Au50 alloy NPs depicted a fast electron thermalization time of ~180 fs. A slower decay of positive absorption from alloy NPs was observed when compared to pure Au NPs. These NPs demonstrated a rapid initial electron thermalization and exhibited similar electron-phonon relaxation times. The third-order nonlinear optical (NLO) properties were measured using the Z-scan technique with 1 kHz repetition rate fs pulses at 800 nm. It is observed that the alloy NPs possessed large value of the NLO susceptibility χ(3) (~10−13 esu) compared to pure gold NPs at 800 nm finding applications in different areas of photonics

Femtosecond Transient Absorption Spectroscopy Studies of Ethynylthiophene Functionalized Porphyrin

Ultrafast excited state molecular relaxation process in a ethynylthiophene functionalized D-π-A porphyrin (LG5) molecule sensitizer in solution and thin film form has been studied using femtosecond transient absorption techniques upon pumping with 400 nm

Influence of gold nanoparticles on the nonlinear optical and photoluminescence properties of Eu2O3 doped alkali borate glasses

Alkali borate glasses activated with trivalent europium ions and rooted with gold (Au) nanoparticles (NPs) were synthesised through a melt quenching process involving a selective thermochemical reduction and their applicability as photonic materials was assessed in detail. Non-linear optical (NLO) measurements were performed using a Z-scan approach in the wavelength range of 700-1000 nm. The open aperture Z-scan signatures for the Eu3+-containing glasses embedded with and without the Au NPs established a reverse saturable absorption (RSA) at all of the studied wavelengths ascribed to the two-photon absorption (2PA). Surprisingly, the nonlinear optical absorption switched to a saturable absorption (SA) with an increase in the concentration of AuCl3. With the incorporation of the Au NPs, the UV excited photoluminescence (PL) intensity of the Eu3+-doped glasses increased first as a consequence of the local field enhancement by the Au NPs, and subsequently decreased at a higher concentration of AuCl3 due to the reverse energy transfer from the Eu3+ ion to the Au-0 NPs. The electronic polarization effect of the host glass enhanced the D-5(0) -> F-7(4) transition intensity on the incorporation of the gold NPs owing to the gold NP-embedded glasses showing a deep-red emission. The NLO and PL studies suggested that the investigated glasses containing a 0.01 mol% of AuCl3 is practically appropriate for photonic applications

Statistics pertaining to HPRD growth, experimental types for protein–protein interactions and a breakdown of PTMs

<p><b>Copyright information:</b></p><p>Taken from "Human protein reference database—2006 update"</p><p>Nucleic Acids Research 2005;34(Database issue):D411-D414.</p><p>Published online 28 Dec 2005</p><p>PMCID:PMC1347503.</p><p>© The Author 2006. Published by Oxford University Press. All rights reserved</p> () Growth of HPRD over the last 3 years with respect to protein entries, protein–protein interactions and PTMs. () Distribution of protein–protein interactions in HPRD based on the type of the experimental method. () Distribution of various types of PTMs in HPRD. The percentage of the respective PTM is indicated only when it is greater than or equal to 2

Synthesis and characterization of NiO nanostructures: a review

In the last decade, NiO nanostructures (NSs) have gained a growing attention from the scientific community because they are cheap, facile to produce and isolate, and they could be employed in a plethora of application ranging from photoelectrochemical device to smart window, from catalysis to sensor. Throughout this review, the most widely employed and effective synthetic techniques are summarized and their advantages and drawbacks are highlighted and compared. Almost all these synthetic pathways produce amorphous nanostructures that need to be annealed to obtain crystalline products. The quite high temperature required for this procedure is the main issue that prevents the scalability of these procedures. Throughout this review, a brief description of the main experimental techniques employed to characterize the nanostructures is provided as well. The investigated features of these materials deeply depend on the application the latter are produced for. © 2018, Springer Nature B.V